View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9418_low_3 (Length: 378)
Name: NF9418_low_3
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9418_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 46266741 - 46266380
Alignment:
| Q |
1 |
gaccaacacaaatgccgaattgtctcaggttaattataacatctttttatttattattcactttcataacttacttttcatgcacataatctattggttg |
100 |
Q |
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| T |
46266741 |
gaccaacacaaatgccgaattgtctcaggttaattataacatctttttatttattattcactttcataacttacttttcatgcacataatctattggttg |
46266642 |
T |
|
| Q |
101 |
taaaaatagtacatcatatacatattatggtacatacatgagtttttatttgataattgaagaacgaggatggtgcttctgtctgtagttattatcaatg |
200 |
Q |
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| T |
46266641 |
taaaaatagtacatcatatacatattatggtacatacatgagtttttatttgataattgaagaacgaggatggtgcttctgtctgtagttattattaatg |
46266542 |
T |
|
| Q |
201 |
aggggaagagtcacgtggttattatatatgctatgtaacactgacatctcagattgaaggtgtgtccggtgtctgacacatgttagtgtcggccaatgtg |
300 |
Q |
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| T |
46266541 |
aggggaagagtcacgtggttattatatattctatgtaacactgacatctcaaattgaaggtgtgtccggtgtctgacacatgttagtgtcggccaatgtg |
46266442 |
T |
|
| Q |
301 |
attatctataacaatgtgtcaatgacgtgtttgatgtccatgcatgtgtaagtgcttcatat |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46266441 |
attatctataacaatgtgtcaatgacgtgtttgatgtccatgcatgtgtaagtgcttcatat |
46266380 |
T |
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