View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9418_low_6 (Length: 324)

Name: NF9418_low_6
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9418_low_6
NF9418_low_6
[»] chr4 (2 HSPs)
chr4 (26-311)||(42083066-42083351)
chr4 (98-311)||(42086665-42086868)
[»] chr7 (3 HSPs)
chr7 (109-160)||(22284482-22284533)
chr7 (103-149)||(37603915-37603961)
chr7 (92-156)||(3262022-3262086)
[»] chr2 (2 HSPs)
chr2 (92-147)||(6933139-6933194)
chr2 (109-154)||(18626931-18626976)
[»] chr8 (2 HSPs)
chr8 (103-149)||(30922528-30922574)
chr8 (98-149)||(8217034-8217086)
[»] chr5 (1 HSPs)
chr5 (109-145)||(19629033-19629069)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 26 - 311
Target Start/End: Original strand, 42083066 - 42083351
Alignment:
Q  26 cacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataataatttgaaaaa 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42083066 cacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataataatttgaaaaa 42083165  T
Q  126 tggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgctacatagctttcaaataattaatatctta 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  42083166 tggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttctttaatatgaagcatcggtgctgcatagctttcaaataattaatatctta 42083265  T
Q  226 aaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacacttatgatttggcct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42083266 aaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacacttatgatttggcct 42083351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 311
Target Start/End: Original strand, 42086665 - 42086868
Alignment:
Q  98 acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct 197  Q
    ||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| ||    |||||||||  || |||||    
T  42086665 acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtc-gtgct 42086759  T
Q  198 acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacac 297  Q
    ||||||||||||||    | ||| ||| |||||||||| ||| ||||||| || | ||||||||||||||| | ||||  | ||||||| |||| || ||    
T  42086760 acatagctttcaaa----tcataccttcaaatttaatatatgcacatgga-gaaagggttttgtgacttaccttgagtccacctggtttgtcaccaaaac 42086854  T
Q  298 ttatgatttggcct 311  Q
    |  |||||||||||    
T  42086855 tattgatttggcct 42086868  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
Q  109 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca 160  Q
    |||||||||||||||||||||| || |||||||||||| || ||||||||||    
T  22284533 gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca 22284482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
Q  103 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 149  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||    
T  37603915 gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca 37603961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
Q  92 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg 156  Q
    ||||| |||||||||   ||||||||||  ||||| |||||||||||| ||||||||| ||||||    
T  3262022 actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg 3262086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
Q  92 actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta 147  Q
    ||||| |||| |||| ||||| || ||||||||||||||||||||||| |||||||    
T  6933139 actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta 6933194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
Q  109 gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt 154  Q
    |||||||||||||||| ||||||||| ||||| |||||||| ||||    
T  18626931 gataataatttgaaaactggaagaaactgaatataactacatgtgt 18626976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
Q  103 gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca 149  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||    
T  30922528 gacaatgataataattagaaaaatgcaataaattgaatgtaactaca 30922574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
Q  98 acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca 149  Q
    |||| ||||||||||||||||| | ||||| |||| |||||||||||||||||    
T  8217086 acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca 8217034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
Q  109 gataataatttgaaaaatggaagaaattgaatgtaac 145  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  19629033 gataatactttgaaaaatggaagtaattgaatgtaac 19629069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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