View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9418_low_8 (Length: 303)
Name: NF9418_low_8
Description: NF9418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9418_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 52512622 - 52512343
Alignment:
| Q |
1 |
aggtgcagcaactggcgctccaccctttacgggatggatgattcttgaaggagtggataagggagaggggacagatcctgtaccannnnnnnnnnngtta |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52512622 |
aggtgcggcaactggcgctccaccctttacgggatggatgattcttgaaggagtggataagggagaggggacagatcctgtaccatttttttttttgtta |
52512523 |
T |
|
| Q |
101 |
attaagcatccatgaattgaaaagtatgattgcaaatgtcatttgaacataatcaacatacaagaagttaaaatggatgcaaaggatgaacattttagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512522 |
attaagcatccatgaattgaaaagtatgattgcaaatgtcatttgaacataatcaacatacaagaagttaaaatggatgcaaaggatgaacattttagaa |
52512423 |
T |
|
| Q |
201 |
tgcagagttcagtcgaaaggtaagtaaaatttagccaacgattgttgcagccaaaattcgaactcccggagagcacagct |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512422 |
tgcagagttcagtcgaaaggtaagtaaaatttagccaatgattgttgcagccaaaattcgaactcccggagagcacagct |
52512343 |
T |
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