View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9419_high_5 (Length: 291)
Name: NF9419_high_5
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 3213548 - 3213267
Alignment:
| Q |
1 |
cttgttcaccactactccctatgatcccttaatcctgactaagatgtttccttatcatcccttcccctccacaaccctcctgccaatacatctcagtccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3213548 |
cttgttcaccactactccctatgatcccttaatcctgactaagatgtttccttatcatcccttcccctccacaaccctcctgccaatacatctcagtccc |
3213449 |
T |
|
| Q |
101 |
tccctacatctacttcctcatcctcacaaccttcacataattctcctactatattgtctcctcaatcagttttaccttcttctgttgacatattctagcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3213448 |
tccctacatctacttcctcatcctcacaaccttcacataattctcctactatattgtctcctcaatcagttttaccttcttctgttgacatatcctagcc |
3213349 |
T |
|
| Q |
201 |
gtctgcctcctcacagttgcctctgtgtcatctcctactcctaatcccactaatgttcttcctattaacaatcatcctatgc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
3213348 |
gtctgcctcctcacagttgcctctgtgtcatctcctactcctaatctcactaatgttcttcctattaacaatcatccaatgc |
3213267 |
T |
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