View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9419_low_1 (Length: 648)
Name: NF9419_low_1
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 16 - 639
Target Start/End: Complemental strand, 7666454 - 7665831
Alignment:
| Q |
16 |
ggtttctcagcagtaatgcacctcaaatacatttctaaagtcttgttaactgcttccgattgaccatcggattgagggtggtatgctgaactcattgaca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7666454 |
ggtttctcagcagtaatgcacctcaaatacatttctaaagtcttgttaactacttccgattgaccatcggattgagggtggtatgctgaactcattgaca |
7666355 |
T |
|
| Q |
116 |
aagtagtgccctgcaactcaaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttaggtatgccatgtaatttgac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7666354 |
aagtagtgccctgcaactcaaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttaggtatgccatgtaatttgac |
7666255 |
T |
|
| Q |
216 |
gatattagtcataaaaacttcatcaacagatttactagaatagtcaggcttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7666254 |
gatattagtcataaaaacttcatcaacagatttactagaatagtcaggcttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactaga |
7666155 |
T |
|
| Q |
316 |
atggctgtaaagccacaagataatggcaagtcagtaataaaatccatagtaacatcttcccatacctgagtgggtattggtagaggctgcaacaaccctg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7666154 |
atggctgtaaagccacaagataatggcaagtcagtaataaaatccatagtaacatcttcccatacctgagtgggtattggcagaggctgcaacaaccctg |
7666055 |
T |
|
| Q |
416 |
ctggcagtgtagtcatatgtttagcctgctgacagatcagacattctgtgatgaacttgtgaaccgccgtcttcatatttggccaataaaattcagcact |
515 |
Q |
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| T |
7666054 |
ctggcagtgtagtcatatgtttagcctgctgacagatcagacattctgtgatgaacttgtgaaccgccgtcttcatatttggccaataaaattcagcact |
7665955 |
T |
|
| Q |
516 |
tattcgtgccatagtcctagtaatgcctgcatgccctccaatcggtgaagcatgaaactcttgcaacacttgttggattaatgaactatccaccggcaaa |
615 |
Q |
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| T |
7665954 |
tattcgtgccatagtcctagtaatgcctgcatgccctccaatcggtgaagcatgaaactcttgcaacacttgttggattaatgaactatccaccggcaaa |
7665855 |
T |
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| Q |
616 |
actagtttgttcttccagtataat |
639 |
Q |
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|||||||||||||||||||||||| |
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| T |
7665854 |
actagtttgttcttccagtataat |
7665831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 14311695 - 14311532
Alignment:
| Q |
34 |
cacctcaaatacatttctaaagtcttgttaactgcttccgattgaccatcggattgagggtggtatgctgaactcattgacaaagtagtgccctgcaact |
133 |
Q |
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| T |
14311695 |
caccttaaatacatttcgagaatcttatttacggcctctgattgaccattggattgaggatggtatgccgaactcatagctagagtagtgccttgcatct |
14311596 |
T |
|
| Q |
134 |
caaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttagg |
197 |
Q |
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|||||| ||||||||||| ||||| |||||||| |||||||||||||| | ||| |||||||| |
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| T |
14311595 |
taaacaagtgctgccaaaaattactagtaaaaaccttatctctatctgagataatcgacttagg |
14311532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 14311072 - 14310912
Alignment:
| Q |
70 |
tccgattgaccatcggattgagggtggtatgctgaactcattgacaaagtagtgccctgcaactcaaacaactgctgccaaaatttacttgtaaaaactt |
169 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||| | | ||||||||| |||| || || ||| |||||| |||| ||||| ||||||| | |
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| T |
14311072 |
tccgattgaccatcagattgaggatggtatgccaaactcatagctagagtagtgccttgcatcttaagcaagtgctgcaaaaaattactagtaaaaatct |
14310973 |
T |
|
| Q |
170 |
tatctctatctgacacaatggacttaggtatgccatgtaatttgacgatattagtcataaa |
230 |
Q |
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||||||||||||| | ||| ||||||| | || |||| |||||| ||||||||| |||| |
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| T |
14310972 |
tatctctatctgagataatcgacttagcgactccgtgtagtttgacaatattagtcctaaa |
14310912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 61 - 383
Target Start/End: Complemental strand, 31284773 - 31284451
Alignment:
| Q |
61 |
ttaactgcttccgattgaccatcggattgagggtggtatgctgaactcattgacaaagtagtgccctgcaactcaaacaactgctgccaaaatttacttg |
160 |
Q |
| |
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||||| ||||| ||||| ||||| | |||||| || || |||| ||||| ||||| || ||||| |||| | |||||| |||||||| ||||| || | |
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| T |
31284773 |
ttaacagcttctgattgtccatccgtttgaggatgataagctgtgctcatggacaatgttgtgccttgcatttgaaacaaatgctgccagaatttgctgg |
31284674 |
T |
|
| Q |
161 |
taaaaactttatctctatctgacacaatggacttaggtatgccatgtaatttgacgatattagtcataaaaacttcatcaacagatttactagaatagtc |
260 |
Q |
| |
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|||| || || |||||||| || | ||| |||||||| || || |||||||| || | |||| ||||||| | ||| |||||| |||| ||||| || |
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| T |
31284673 |
taaataccttgtctctatcagagataattgacttaggcattccgtgtaattttactacattattcataaatgcctcagcaacagtcctacttgaataatc |
31284574 |
T |
|
| Q |
261 |
aggcttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccacaagataatggcaagtcagtaataaaatcc |
360 |
Q |
| |
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| ||||| |||||||||||||| || ||| ||| ||||| || || || | ||| | ||||| ||| |||||| |||||| |||||||||||||| |
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| T |
31284573 |
ggctttcaagggcatgaaatgagcatatttactcagcctatctacgacgaccataataacagtaaaaccaaaagatagtggcaatccagtaataaaatcc |
31284474 |
T |
|
| Q |
361 |
atagtaacatcttcccatacctg |
383 |
Q |
| |
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||||| ||||| || |||||||| |
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| T |
31284473 |
atagttacatcatcacatacctg |
31284451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 383
Target Start/End: Original strand, 9620397 - 9620719
Alignment:
| Q |
61 |
ttaactgcttccgattgaccatcggattgagggtggtatgctgaactcattgacaaagtagtgccctgcaactcaaacaactgctgccaaaatttacttg |
160 |
Q |
| |
|
||||| ||||| ||||| ||||| | |||||| || || | || ||||| ||||| || ||||| |||| | |||||| |||||||| ||||| || | |
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| T |
9620397 |
ttaacagcttctgattgtccatccgtttgaggatgataagttgtgctcatggacaatgttgtgccttgcatttgaaacaaatgctgccagaatttgctgg |
9620496 |
T |
|
| Q |
161 |
taaaaactttatctctatctgacacaatggacttaggtatgccatgtaatttgacgatattagtcataaaaacttcatcaacagatttactagaatagtc |
260 |
Q |
| |
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|||| || || |||||||| || | ||| |||||||| || || |||||||| || | || | ||| ||| | ||| |||||| || | ||||| || |
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| T |
9620497 |
taaataccttgtctctatcagagataattgacttaggcattccgtgtaattttactacataattcacaaatgcctcagcaacagtcctatttgaataatc |
9620596 |
T |
|
| Q |
261 |
aggcttcaatggcatgaaatgagcgtacttagtcaatctatccacaaccactagaatggctgtaaagccacaagataatggcaagtcagtaataaaatcc |
360 |
Q |
| |
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|| ||||| |||||||||||||| || ||| ||| ||||| || || || | ||| | ||||| ||| |||||| |||||| |||||||||||||| |
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| T |
9620597 |
agctttcaagggcatgaaatgagcatatttactcagcctatctacgacgaccataataacagtaaaaccaaaagatagtggcaatccagtaataaaatcc |
9620696 |
T |
|
| Q |
361 |
atagtaacatcttcccatacctg |
383 |
Q |
| |
|
||||| ||||| ||||||||||| |
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| T |
9620697 |
atagttacatcatcccatacctg |
9620719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 10996385 - 10996298
Alignment:
| Q |
121 |
gtgccctgcaactcaaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatggacttaggtatgccatgta |
208 |
Q |
| |
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|||||||||| | |||||| | |||||| ||| |||||||||||| || ||||||| ||| ||||||||||| || |||||||||| |
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| T |
10996385 |
gtgccctgcagtttaaacaagttctgccagaatccacttgtaaaaaccttgtctctatttgaaacaatggacttgggaatgccatgta |
10996298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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