View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9419_low_10 (Length: 367)
Name: NF9419_low_10
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 21008332 - 21008667
Alignment:
| Q |
20 |
gggatccatggtatttgtggcggcttaggtcgcattcgctttgacggtttcacaagaaatggagaagatcccatcccgtaaccacacataccaaagaagc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21008332 |
gggatccatggtatttgtggcggcttaggtcgcattcgctttgacggtttcacaagaaatggagaagatcccatcccgtaaccacacataccaaagaagc |
21008431 |
T |
|
| Q |
120 |
agagttcgtccaacgggcatctatgtccacacttaccacaattaaaaatacttaagtttatatccctgcataaacctctacaacatttccaattaaaagg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21008432 |
agagttcgtccaacgggcatctatgtccacacttaccacaattaaaaatacttaagtttatatccctgcataaacctctacaacatttccaattaaaagg |
21008531 |
T |
|
| Q |
220 |
acatctaataccacacaacccgcaattgtttctatccgatgttacattcacacaacggtttcgacaacacatactcctaggtggaaattctcctctgctg |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21008532 |
acatctaataccacacaacccacaattgtttctatccgatgttacattcacacaacggtttcgacaacacatactcctgggtggaaattctcctctgctg |
21008631 |
T |
|
| Q |
320 |
cacatccatggtctgccgcggcaccctaaaggcctt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
21008632 |
cacatccatggtctgccgcggcaccctaaaggcctt |
21008667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 1848955 - 1849076
Alignment:
| Q |
22 |
gatccatggtatttgtggcggcttaggtcgcattcgctttgacggtttcacaagaaatggagaagatcccatcccgtaaccacacataccaaagaagcag |
121 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1848955 |
gatccatggtatttgtggcggcttagatcacgttcgcttcggtggcttcggaagaaatggagaagatcccatcccgtaaccacacataccaaagaagcag |
1849054 |
T |
|
| Q |
122 |
agttcgtccaacgggcatctat |
143 |
Q |
| |
|
|||| | | ||||||||||||| |
|
|
| T |
1849055 |
agtttgccaaacgggcatctat |
1849076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 1849077 - 1849147
Alignment:
| Q |
167 |
atacttaagtttatatccctgcataaacctctacaacatttccaattaaaaggacatctaataccacacaa |
237 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1849077 |
atactcaagtttatatccctgcataaacctctacgacattgccaattaaaaggacatctaataccacacaa |
1849147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University