View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9419_low_12 (Length: 360)
Name: NF9419_low_12
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 1489176 - 1488834
Alignment:
| Q |
1 |
catttggtaagattcctgccttcattctcccattgatttaacacagaagcagaacccaattcaggattctccatcattgaaatcctcttgtatatagcat |
100 |
Q |
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| T |
1489176 |
catttggtgagattcctgccttcattctcccattgattcaacacagaagcagaacccaattcaggattctccatcattgaaatcctcttgtatatagcat |
1489077 |
T |
|
| Q |
101 |
tccatttcaaattgggttttctctcataatcaagtgtaccataattgtgaatctttgagattgaacaagtgacagaaactcttgctcctcctccaattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
1489076 |
tccatttcaaattgggttttctctcataatcaagtgtaccataattgtgaatctttgagattgaacaagtgacagaaactcttgctccacctccaattcc |
1488977 |
T |
|
| Q |
201 |
actgtcagtgtaaaagacattgaccctttgtttgaagggggaaagagtatgagaataagaaagtgaaagagaaactttttggttttgtaaagaagattga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1488976 |
actgtcagtgtaaaagacattgaccctttgtttgaagggggaaagagtatgagaataagaaagtgaaagagaaacgttttggttttgtaaagaagattga |
1488877 |
T |
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| Q |
301 |
atttgaagaggcgtaatagtagtcatcattttctgagtgtgtg |
343 |
Q |
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| T |
1488876 |
atttgaagaggcgtaatagtaatcatcattttctgagtgtgtg |
1488834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 11834282 - 11834547
Alignment:
| Q |
1 |
catttggtaagattcctgccttcattctcccattgatttaacacagaagcagaacccaattcaggattctccatcattgaaatcctcttgtatatagcat |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
11834282 |
catttggtgagattcctgccttcattctcccattgattcaacacagaagcagaacccaattcaggattctgcatcattgaaattctcttgtatatagcat |
11834381 |
T |
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| Q |
101 |
tccatttcaaattgggttttctctcataatcaagtgtaccataattgtgaatctttgagattgaacaagtgacagaaac---tcttgctcctcc------ |
191 |
Q |
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| T |
11834382 |
tccatttcaaattgggttttctctcataatcaagagtaccataattgtgaatctttgaaattgaacaagtgacagaaactcttcttgctcctccaattcc |
11834481 |
T |
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| Q |
192 |
---tccaattacactgtcagtgtaaaagacattgaccctttgtttgaagggggaaagagtatgagaata |
257 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11834482 |
aattccaattccagggtcagtgtaaaagacattgaccctttgtttgaaggg---aagagtatgagaata |
11834547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 11834567 - 11834612
Alignment:
| Q |
259 |
gaaagtgaaagagaaactttttggttttgtaaagaagattgaattt |
304 |
Q |
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| T |
11834567 |
gaaagtgaaagagaaacattttggttttgtaaagaagattgaattt |
11834612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 11834632 - 11834677
Alignment:
| Q |
289 |
aaagaagattgaatttgaagaggcgtaatagtagtcatcattttct |
334 |
Q |
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| T |
11834632 |
aaagaagattgaatttgaagaggcgtaatagtggtcatcattttct |
11834677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 9033904 - 9033807
Alignment:
| Q |
4 |
ttggtaagattcctgccttcattctcccattgatttaacacagaagcagaacccaattcaggattctccatcattgaaatcctcttgtatatagcatt |
101 |
Q |
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| T |
9033904 |
ttggtgagatttttgccttcattctcccattgattcaacacagaagcagaactcaattcaggattctccatcatcgatattcttttgtatataacatt |
9033807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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