View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9419_low_18 (Length: 289)
Name: NF9419_low_18
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 41736995 - 41737254
Alignment:
| Q |
19 |
aaaaccatagacatgcatgcctttaacaggtatccgtaactcagctgcaagctgtagaaagaaaaagaaattagtaaacagataataaaagttaaccaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41736995 |
aaaaccatagacatgcatgcctttaacaggtatccgtaactcagctgcaagctgtagaaagaaaaagaaattagtaaacagataataaaagttaaccaca |
41737094 |
T |
|
| Q |
119 |
ataaaatcttgataaagaatcataaaacgaggctagtaattcctacctccagcatgtttctggcagcaccaagttcacccatgttgtaaccccttacaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41737095 |
ataaaatcttgataaagaatcataaaacgaggctagtaattcctacctccagcatgtttctggcagcaccaagttcacccatgttgtaaccccttacaga |
41737194 |
T |
|
| Q |
219 |
ataagggccaccaagagtaaaagcatcataacttggaagatcgcctacacaaccaccata |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41737195 |
ataagggccaccaagagtaaaagcatcataacttggaagatcgcctacacaaccaccata |
41737254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 29 - 278
Target Start/End: Original strand, 4601227 - 4601482
Alignment:
| Q |
29 |
acatgcatgcctttaacaggtatccgtaactcagctgcaagctgtagaaagaaaaagaaattagtaaacagataataaaagttaaccac------aataa |
122 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || | ||| |
|
|
| T |
4601227 |
acatgcatgcctttaacaggtatccagaactcagctgcaagctgtagaaagaaaaagaaattagtaaacagataataacaattaactactgtacaattaa |
4601326 |
T |
|
| Q |
123 |
aatcttgataaagaatcataaaacgaggctagtaattcctacctccagcatgtttctggcagcaccaagttcacccatgttgtaaccccttacagaataa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
4601327 |
catcttgataaagaatcataaaacgaggctagtaattccaacctccagcatgtttctggcagtaccaagctcacccatgttgtaaccccttagagagtaa |
4601426 |
T |
|
| Q |
223 |
gggccaccaagagtaaaagcatcataacttggaagatcgcctacacaaccaccata |
278 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4601427 |
ggtccaccgagagtaaaagcatcataaattggaagatcgcctacacaaccaccata |
4601482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 24168390 - 24168506
Alignment:
| Q |
162 |
tacctccagcatgtttctggcagcaccaagttcacccatgttgtaaccccttacagaataagggccaccaagagtaaaagcatcataacttggaagatcg |
261 |
Q |
| |
|
|||||| || ||||||||||| || |||| ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| |
|
|
| T |
24168390 |
tacctcgaggatgtttctggctgctccaatctcacccatgttgtaaccccttacagaatagggacccccaagagtaaaagcatcataacttggaagatca |
24168489 |
T |
|
| Q |
262 |
cctacacaaccaccata |
278 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
24168490 |
cctacacaaccaccata |
24168506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University