View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9419_low_19 (Length: 235)
Name: NF9419_low_19
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_low_19 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 10734 - 10937
Alignment:
| Q |
14 |
ttggtgttgcacgtacaccaatgggtgggtttcttggtactctttcatctgtacctgccaccaagctaggctcgatagctattgaaggtaattatgttaa |
113 |
Q |
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| T |
10734 |
ttggtgttgcacgtacaccaatgggtgcgtttcttggtactctttcatctgtacctgccaccaagctaggctcgatagctattgaaggtaattatgttaa |
10833 |
T |
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| Q |
114 |
cttgtgcagtttgtatttcattgtatttgagacttatagaagatatgcttatgtctgttttgttgatatgtagctgctcttaaaagggccaatgttgatc |
213 |
Q |
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| T |
10834 |
cctgtgcagttcgtatttcattgtatttgagacttatagaagatatgcttatgtctgttttgttgatatgtagctgctcttaaaagggccaatgttgatc |
10933 |
T |
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| Q |
214 |
cagc |
217 |
Q |
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|||| |
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| T |
10934 |
cagc |
10937 |
T |
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Back To:
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Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 43051471 - 43051268
Alignment:
| Q |
14 |
ttggtgttgcacgtacaccaatgggtgggtttcttggtactctttcatctgtacctgccaccaagctaggctcgatagctattgaaggtaattatgttaa |
113 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051471 |
ttggtgttgcacgtacaccaatgggtgcgtttcttggtactctttcatctgtacctgccaccaagctaggctcgatagctattgaaggtaattatgttaa |
43051372 |
T |
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| Q |
114 |
cttgtgcagtttgtatttcattgtatttgagacttatagaagatatgcttatgtctgttttgttgatatgtagctgctcttaaaagggccaatgttgatc |
213 |
Q |
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| T |
43051371 |
cctgtgcagttcgtatttcattgtatttgagacttatagaagatatgcttatgtctgttttgttgatatgtagctgctcttaaaagggccaatgttgatc |
43051272 |
T |
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| Q |
214 |
cagc |
217 |
Q |
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|||| |
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| T |
43051271 |
cagc |
43051268 |
T |
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