View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9419_low_2 (Length: 582)
Name: NF9419_low_2
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 46654477 - 46655044
Alignment:
| Q |
1 |
acaaaacattgttcttcaggattcactgttattcttgtttatgttgatgatttagtcttgggagggacagataccaatgaaattcagactatcaagactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46654477 |
acaaaacattgttcttcaggattcactattattcttgtttatgttgatgatttagtcttgggagggacagataccaatgaaattcagactatcaagactt |
46654576 |
T |
|
| Q |
101 |
tacttgataataaatttagtattaaggatcttggaactctcaaatactttcttggttttgaagttgctagatcacaaaatggcatctctttatgtcaaag |
200 |
Q |
| |
|
||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46654577 |
tacctgataataaatttagcatcaaggatcttggaactctcaaatactttcttggttttgaagttgctagatcacaaaatggcatctctttatgtcaaag |
46654676 |
T |
|
| Q |
201 |
aaaatatacactggatcttcttcaagatgcaggccttcttggtgctaaaccttgctccactccaatggaacctcaccttcaattgcacaagaattctggt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46654677 |
aaaatatacactggatcttcttcaagatgcaggccttcttggtgctaaaccttgctccactccaatggaacctcaccttcaattgcacaagaattcaggt |
46654776 |
T |
|
| Q |
301 |
gaccttttacctgaacctacaatatatagaagattaattggaagacttctatatttgactcactcaagacctgagatatcttatgcagtgagcaaactta |
400 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46654777 |
gaccttttacctgaacctacaacatatagaagattaattggaagacttctatatttgactcactcaagacctgagatatcttatgcagtgagcaaactta |
46654876 |
T |
|
| Q |
401 |
gtcaatttttggctgcaccaagaactgatcatatgtcagctgctctacatgttcttaagtttcttaagaataatcctggcaaaggtcttttcttcagcgc |
500 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46654877 |
gtcaattttttgctgcaccaagaactgatcatatgtcagctgctctacatgttcttaagtttcttaagaataatcctggcaaaggtcttttcttcagtgc |
46654976 |
T |
|
| Q |
501 |
ctcttcatctttaactctcaaagggttctcagattctgactggggtgcttgtcctgacactagaaggt |
568 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
46654977 |
ctcttcatctttaactctcaaagggttctcagattatgactggggtgcttgtcctgacactagaaggt |
46655044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 9e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 22 - 530
Target Start/End: Complemental strand, 21213787 - 21213279
Alignment:
| Q |
22 |
ttcactgttattcttgtttatgttgatgatttagtcttgggagggacagataccaatgaaattcagactatcaagactttac-ttgataataaatttagt |
120 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||| || ||||||||||||| | | |||| || ||| ||||||||| |||| ||||| |||||||||| |
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| T |
21213787 |
ttcactgttatttctgtatatgtagatgatttggtattgggagggacaggtgctgatgatttt-agaatatcaagaccttaccttgatgataaatttagc |
21213689 |
T |
|
| Q |
121 |
attaaggatcttggaactctcaaatactttcttggttttgaagttgctagatcacaaaatggcatctctttatgtcaaagaaaatatacactggatcttc |
220 |
Q |
| |
|
|| ||||| || |||||||| |||| || ||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||| || | ||| ||||| |
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|
| T |
21213688 |
atcaaggacctgagaactctcgaatatttccttggttttgaagttgctagaacacaaaatgaaatctctttatgccaaaggaaatgtatattgggtcttc |
21213589 |
T |
|
| Q |
221 |
ttcaagatgcaggccttcttggtgctaaaccttgctccactccaatggaacctcaccttcaattgcacaagaattctggtgaccttttacctgaacctac |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||| || ||||||||| || || || ||||||| |
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|
| T |
21213588 |
ttcaagatgcaggccttcttggtgctaaaccttgttctactccaatgaaacctcaacttcaattgcataaatcttctggtgaactattgtctaaacctac |
21213489 |
T |
|
| Q |
321 |
aatatatagaagattaattggaagacttctatatttgactcactcaagacctgagatatcttatgcagtgagcaaacttagtcaatttttggctgcacca |
420 |
Q |
| |
|
|| ||| ||||| ||||||||| || | |||||| ||||||| |||| |||||||||||||||||||| ||||| ||| ||| ||||||| ||| ||| |
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|
| T |
21213488 |
aacataaagaaggttaattggaggattactatatctgactcattcaacgcctgagatatcttatgcagtaagcaagctttgtcggtttttggatgctcca |
21213389 |
T |
|
| Q |
421 |
agaactgatcatatgtcagctgctctacatgttcttaagtttcttaagaataatcctggcaaaggtcttttcttcagcgcctcttcatctttaactctca |
520 |
Q |
| |
|
|| ||| | ||| ||| | | | ||||||| || |||||||||||||||| ||||| |||||| ||||||| || || ||||| ||||||||||| | |
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|
| T |
21213388 |
aggactaaacatgtgttggtttcattacatgtcctaaagtttcttaagaatagccctggaaaaggtattttctttagtgcatcttcttctttaactctta |
21213289 |
T |
|
| Q |
521 |
aagggttctc |
530 |
Q |
| |
|
|||| ||||| |
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|
| T |
21213288 |
aaggtttctc |
21213279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 42126538 - 42126725
Alignment:
| Q |
22 |
ttcactgttattcttgtttatgttgatgatttagtcttgggagggacagataccaatgaaattcagactatcaagactttacttgataataaatttagta |
121 |
Q |
| |
|
|||| ||||||||| || ||||| |||||||| ||||| |||||||| ||||| | |||||||| || ||||| || | || || ||||| || | |
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|
| T |
42126538 |
ttcattgttattctggtgtatgtagatgatttggtcttaggagggactgatactatagaaattcaacaaattaagaccctattggacaagaaattcagca |
42126637 |
T |
|
| Q |
122 |
ttaaggatcttggaactctcaaatactttcttggttttgaagttgctagatcacaaaatggcatctctttatgtcaaagaaaatatac |
209 |
Q |
| |
|
|||| ||| | |||||||| ||||||||| | || ||||||||||| |||||||||| ||| ||| |||| ||||| ||||||||||| |
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| T |
42126638 |
ttaaagatttaggaactcttaaatactttataggatttgaagttgcaagatcacaaactggaatcactttgtgtcagagaaaatatac |
42126725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 43577056 - 43577243
Alignment:
| Q |
22 |
ttcactgttattcttgtttatgttgatgatttagtcttgggagggacagataccaatgaaattcagactatcaagactttacttgataataaatttagta |
121 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| ||||| |||||||| ||| | | ||||||| || ||||| || | || || ||||| || | |
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|
| T |
43577056 |
ttcactgttattctggtgtatgtagatgatttggtcttaggagggactgatcctacataaattcaacaaattaagaccctattggacaagaaattcagca |
43577155 |
T |
|
| Q |
122 |
ttaaggatcttggaactctcaaatactttcttggttttgaagttgctagatcacaaaatggcatctctttatgtcaaagaaaatatac |
209 |
Q |
| |
|
|||| ||| | |||||||| ||||||||||| || ||||||||||| |||||||||| ||| ||| |||| || |||||||| ||||| |
|
|
| T |
43577156 |
ttaaagatttaggaactctgaaatactttctaggatttgaagttgcaagatcacaaactggaatcactttgtgccaaagaaagtatac |
43577243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 566
Target Start/End: Original strand, 43577480 - 43577600
Alignment:
| Q |
446 |
tacatgttcttaagtttcttaagaataatcctggcaaaggtcttttcttcagcgcctcttcatctttaactctcaaagggttctcagattctgactgggg |
545 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| |||||| |||| | ||||||||| |||||||| || |||| || || || || || || ||||||||||| |
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|
| T |
43577480 |
tacatgttctcaagttccttaaaaataaccctggccaaggattattcttcagctcctcttcacctctaacactgaagggtttttctgactctgactgggg |
43577579 |
T |
|
| Q |
546 |
tgcttgtcctgacactagaag |
566 |
Q |
| |
|
|| |||| ||||| ||||| |
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|
| T |
43577580 |
agcatgtcaagacaccagaag |
43577600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 15296478 - 15296572
Alignment:
| Q |
112 |
aaatttagtattaaggatcttggaactctcaaatactttcttggttttgaagttgctagatcacaaaatggcatctctttatgtcaaagaaaata |
206 |
Q |
| |
|
||||| |||||||||||||| ||| ||| ||||| ||||| || ||||||||||| |||||||||| || || ||||||||||||||||||| |
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|
| T |
15296478 |
aaattcagtattaaggatctaggagttctaaaatattttctaggatttgaagttgccagatcacaaactgaaattactttatgtcaaagaaaata |
15296572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 15476847 - 15476941
Alignment:
| Q |
112 |
aaatttagtattaaggatcttggaactctcaaatactttcttggttttgaagttgctagatcacaaaatggcatctctttatgtcaaagaaaata |
206 |
Q |
| |
|
||||| |||||||||||||| ||| ||| ||||| ||||| || ||||||||||| |||||||||| || || ||||||||||||||||||| |
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|
| T |
15476847 |
aaattcagtattaaggatctaggagttctaaaatattttctaggatttgaagttgccagatcacaaactgaaattactttatgtcaaagaaaata |
15476941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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