View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9419_low_21 (Length: 227)
Name: NF9419_low_21
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_low_21 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 33814290 - 33814500
Alignment:
| Q |
9 |
gaagcagagacgtggtattctatgaagatcagacgatccacaacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| |
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| T |
33814290 |
gaagcagagacgtggtattctatgaagatcagacgatccacgacattcaatctaaaaagccaaagaccattgtggtgcacaattcagggggagagattcc |
33814389 |
T |
|
| Q |
109 |
tcagatgaattacgatcatgatcagctaacagaaccaaatcagatggaggagcctgatcagatagaacaaaatcaagcaatgcatgaagagcagatggca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33814390 |
tcagatgaattacgatcatgatcagctaacagaaccaaatcagatggaggagcctgatcagatagaacaaaatcaagcaatgcatgaagagcagatggca |
33814489 |
T |
|
| Q |
209 |
tatgatgatgt |
219 |
Q |
| |
|
||||||||||| |
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|
| T |
33814490 |
tatgatgatgt |
33814500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 9754855 - 9754645
Alignment:
| Q |
9 |
gaagcagagacgtggtattctatgaagatcagacgatccacaacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcc |
108 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||||| ||||||||||||| ||||||||| ||||||| || || |||||| ||||||||||||| |
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| T |
9754855 |
gaagcagagatgtggtattctatgaagattagacaatccacgacattcaatctaataagccaaaggccattgtggtacacaattcagggggagagattcc |
9754756 |
T |
|
| Q |
109 |
tcagatgaattacgatcatgatcagctaacagaaccaaatcagatggaggagcctgatcagatagaacaaaatcaagcaatgcatgaagagcagatggca |
208 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
9754755 |
tcagatgaattacgatcgtgatcagctaacagaacccaatcagatggatgagcctgatcatatagaccaaaatcaagcaatgcatgaagagcagatggca |
9754656 |
T |
|
| Q |
209 |
tatgatgatgt |
219 |
Q |
| |
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|||| ||||| |
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|
| T |
9754655 |
gatgaggatgt |
9754645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 13564034 - 13563825
Alignment:
| Q |
9 |
gaagcagagacgtggtattctatgaagatcagacgatccacaacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcc |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || ||| ||||||||||||| ||||||||| ||||||| || || |||||| ||||||||||||| |
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|
| T |
13564034 |
gaagcagagatgtggtattctatgaagatcagacaattcacgacattcaatctaataagccaaaggccattgtggtacacaattcagggggagagattcc |
13563935 |
T |
|
| Q |
109 |
tcagatgaattacgatcatgatcagctaacagaaccaaatcagatggaggagcctgatcagatagaacaaaatcaagcaatgcatgaagagcagatggca |
208 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
13563934 |
tcaaatgaattacgatcgtgatcagctaacagaacccaatcagatggatgagcctgatcagatagaccaaaatcaagcaatgcatgaagagcatatggca |
13563835 |
T |
|
| Q |
209 |
tatgatgatg |
218 |
Q |
| |
|
||||||||| |
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|
| T |
13563834 |
gatgatgatg |
13563825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 54969757 - 54969548
Alignment:
| Q |
9 |
gaagcagagacgtggtattctatgaagatcagacgatccacaacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcc |
108 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||| || || |||||| ||||||||||||| |
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|
| T |
54969757 |
gaagtagagatgtggtattctatgaagatcagacaatccacgacattcaatctaataagccaaaggccattgtggtacacaattcagggggagagattcc |
54969658 |
T |
|
| Q |
109 |
tcagatgaattacgatcatgatcagctaacagaaccaaatcagatggaggagcctgatcagatagaacaaaatcaagcaatgcatgaagagcagatggca |
208 |
Q |
| |
|
||| |||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||| |||||| |
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|
| T |
54969657 |
tcaaatgaattatgatcgtgatcagctaacagaacccaatcagatggatgagcctgatcaggtagaccaaaatcaagcaatacatgaagagcatatggca |
54969558 |
T |
|
| Q |
209 |
tatgatgatg |
218 |
Q |
| |
|
||||||||| |
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|
| T |
54969557 |
gatgatgatg |
54969548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 4285666 - 4285562
Alignment:
| Q |
97 |
gggagagattcctcagatgaattacgatcatgatcagctaacagaaccaaatcagatggaggagcctgatcagatagaacaaaatcaagcaatgcatgaa |
196 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||||||| | || |||| ||| ||||| || ||| |||||| ||| ||||||| ||||||||||| ||| |
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|
| T |
4285666 |
gggagagattcctcaaatgaataacgattgtgatcagaaagcacaacccaataagatgaagtagcttgatcacatataacaaaaccaagcaatgcaggaa |
4285567 |
T |
|
| Q |
197 |
gagca |
201 |
Q |
| |
|
||||| |
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|
| T |
4285566 |
gagca |
4285562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 390 - 599
Alignment:
| Q |
9 |
gaagcagagacgtggtattctatgaagatcagacgatccacaacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcc |
108 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| || ||| ||||||||||||| ||||||||| ||||||| || || |||||| ||||||||||||| |
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|
| T |
390 |
gaagaagagatgtggtattctatgaagatcagacaatacacgacattcaatctaataagccaaaggccattgtggtacacaattcagggggagagattcc |
489 |
T |
|
| Q |
109 |
tcagatgaattacgatcatgatcagctaacagaaccaaatcagatggaggagcctgatcagatagaacaaaatcaagcaatgcatgaagagcagatggca |
208 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
490 |
tcaaatgaattacgatcgtgatcagctaacagaacccaatcagatggatgagcctgatcagatagaccaaaatcaagcaatgcatgaagagcatatggca |
589 |
T |
|
| Q |
209 |
tatgatgatg |
218 |
Q |
| |
|
||||||||| |
|
|
| T |
590 |
gatgatgatg |
599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 4838061 - 4837855
Alignment:
| Q |
9 |
gaagcagagacgtggtattctatgaagatcagacgatccacaacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcc |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| | ||||| || || |||||| ||||||||||||| |
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|
| T |
4838061 |
gaagcagagatgtggtattctatgaagatcagacaatccacgacattcaatctaataagccaaaggcgattgtggtacacaattcagggggagagattcc |
4837962 |
T |
|
| Q |
109 |
tcagatgaattacgatcatgatcagctaacagaaccaaatcagatggaggagcctgatcagatagaacaaaatcaagcaatgcatgaagagcagatggca |
208 |
Q |
| |
|
||| ||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
4837961 |
tcaaatgaattacgatcgtgatcagctaacataacccaatcagatggatgagcctgatcagatagaccaaaatcaagcaatgcatgaagagcatatggca |
4837862 |
T |
|
| Q |
209 |
tatgatg |
215 |
Q |
| |
|
|||||| |
|
|
| T |
4837861 |
gatgatg |
4837855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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