View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9419_low_6 (Length: 425)
Name: NF9419_low_6
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 3566826 - 3566424
Alignment:
| Q |
1 |
aactaaagcatttctgtcgatccaagacttaaactcttccataggtgacctcgtaggagtgattcttcacctatgctcatgagctccaataatagagtta |
100 |
Q |
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| T |
3566826 |
aactaaagcatttctgtcgatacaagacttaaactcttccataggtgacctggtaggagtgattcttcacctatgctcatgagctccaataatagagtta |
3566727 |
T |
|
| Q |
101 |
aaatcacatatgaagcaccatgggaaggcatattgagattgcaaaagagatnnnnnnn-ttccataattgtcttctttttctgtaatctgtggaagcata |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566726 |
aaatcacatatgaagcaccatgggaaggcatattgagattgcaaaagagataaaaaaaattccataattgtcttctttttctgtaatctgtggaagcata |
3566627 |
T |
|
| Q |
200 |
cacaacagatataacaaaagtttggtgtccatcaacaattgagaaggaaacatgttgctcatcaagagtaagaataacaaggttcatggagattttacaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3566626 |
cacaacagatataacaaaagtttggtgtccatcaacaattgagaaggaaacatgttgctcatcaagaataagaataacaaggttcatggagattttacaa |
3566527 |
T |
|
| Q |
300 |
aaatactagatattagagagcctattaggtctattgttcaaggcaaacattttaagctgtaaactagttatccatctttcagggaattgttcaaaatcca |
399 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566526 |
aaacactagatattagagagcctatcaggtctattgttcaaggcaaacattttaagctgtaaactagttatccatctttcagggaattgttcaaaatcca |
3566427 |
T |
|
| Q |
400 |
tcc |
402 |
Q |
| |
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||| |
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| T |
3566426 |
tcc |
3566424 |
T |
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