View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9419_low_9 (Length: 390)
Name: NF9419_low_9
Description: NF9419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9419_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 42216276 - 42216635
Alignment:
| Q |
14 |
cagagacccaaaattctttcaaaccctcacgcaaactactgatcacacatgaatgcttccccgtgaagaagtttcttagaatcaaaatatctaggaatca |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216276 |
cagagacccaaaattctttcaaaccctcacccaaactactgatcacacatgaatgcttccccgtgaagaagtttcttagaatcaaaatatctaggaatca |
42216375 |
T |
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| Q |
114 |
ttagtagcgaaaaaagcttagcaattccaagaaacataaaccaacacataatttatagctatcaaactagtttatcttatgtacaatcaatgagttactc |
213 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216376 |
ttagtagcaaaaaaagcttagcaattccaagaaacataaaccaacacataatttatagctatcaaactagtttatcttatgtacaatcaatgagttactc |
42216475 |
T |
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| Q |
214 |
tatacagagcagtcgcacaagtacactactacaatgccgaaaaatgcaaagatccaaatttctaactcaaactaccattcactcataaatccgagtggaa |
313 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216476 |
tatacagagcagtcgtacaagtacactactacaatgccaaaaaatgcaaagatccaaatttctaactcaaactaccattcactcataaatccgagtggaa |
42216575 |
T |
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| Q |
314 |
acaataactactttctaccatatgtttctcaaaaacattataatgtgtaatcagtatctt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42216576 |
acaataactactttctaccatatgtttctcaaaaacattataatgtgtaatcagtatctt |
42216635 |
T |
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