View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9420_high_2 (Length: 442)
Name: NF9420_high_2
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_high_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Complemental strand, 35398556 - 35398138
Alignment:
| Q |
9 |
tggtggtaggaagtagaaactaaaataagcatgccctaaccttaatcaatgaaatgaaattttatatgtagttgagccccttggacacaa-----agata |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| |
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|
| T |
35398556 |
tggtggtaggaagtagaaactaaaataagcatgccctaaccttaatcaatgaaatgaaattttacatgtagttgatccccttggacacaacacaaagata |
35398457 |
T |
|
| Q |
104 |
acttgattagcatttggagctttatatttatatccacaggagaggcattgattgtcatggtctgcaattcttttgcattctttaaaatatactttgcaaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35398456 |
acttgattagcatttggagctttatatttatatccacaggagaggcattgattgtcatggtctgcaattcttttgcattctttaaaatatactttgcaaa |
35398357 |
T |
|
| Q |
204 |
gtgaaagtcgcaattcatgcctttataacctataagggaacatgttttaagttgagatgaaagacattctggaacagtcggttgatccatccaatcaata |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
35398356 |
gtgaaagtcgcaattcatgcctttataacctataagggaacacgttttaagttgagatgaaagacattctggaacaatcggttgatccatccaatcaata |
35398257 |
T |
|
| Q |
304 |
tctttaattccattcccatcacgatcgagaaccctatcaacatcaaacaattttcttagaaaaagaaatcaaaattaaggaagtaaatttaaataaatta |
403 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35398256 |
tctttaattccattcccatca----cgagaaccctgtcaacatcaaacaattttcttagaaaaagaaatcaaaattaaggaagtaaatttaaataaatta |
35398161 |
T |
|
| Q |
404 |
tcatcattttagcatctacaaat |
426 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35398160 |
tcatcattttagcatctacaaat |
35398138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 11378649 - 11378250
Alignment:
| Q |
12 |
tggtaggaagtagaaactaaaataagcatgccctaaccttaatcaatgaaatgaaattttatatgtagttgagccccttggacacaaagataacttgatt |
111 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11378649 |
tggtaggaagtagaaactaaaataaacatgccctaaccttacttaatcaaatgaaattttacatgtagttgagccccttggacacaaagttaacttgatt |
11378550 |
T |
|
| Q |
112 |
agcatttggagctttatatttatatccacaggagaggcattgattgtcatggtctgcaattcttttgcattctttaaaatatactttgcaaagtgaaagt |
211 |
Q |
| |
|
|| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
11378549 |
agaatttggtgctttatgtttatatccacaggagaggcattgattgtcattgtctgcaatacttttgcattcttcaaaatatattttgcaaactgaaagt |
11378450 |
T |
|
| Q |
212 |
cgcaattcatgcctttataacctataagggaacatgttttaagttgagatgaaagacattctggaacagtcggttgatccatccaatcaatatctttaat |
311 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||| | ||||| ||| |
|
|
| T |
11378449 |
cacaattcatgcctttataacctataagggaacatgttttaagctgagatgaaaaacattctggaacaatcggtgtatccatccaatcgacatcttcaat |
11378350 |
T |
|
| Q |
312 |
tccattcccatcacgatcgagaaccctatcaacatcaaacaattttcttagaaaaagaaatcaaa---attaaggaagtaaatttaaataaattatcatc |
408 |
Q |
| |
|
| ||| | |||| | |||||||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
11378349 |
tttatttcgatca----ctagaaccctgtcaacatcagacaattttcttagaacaagaaatcaaaattattaaggaagtagaattaaataaattatcatc |
11378254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 412
Target Start/End: Complemental strand, 11375473 - 11375077
Alignment:
| Q |
12 |
tggtaggaagtagaaactaaaataagcatgccctaaccttaatcaatgaaatgaaattttatatgtagttgagccccttggacacaaagataacttgatt |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
11375473 |
tggtaggaagtagaaactaaaataaacatgccataaccttactcaatcgaatgaaattttacatgtagttgatcccctttgacacaaagataacttgatt |
11375374 |
T |
|
| Q |
112 |
agcatttggagctttatatttatatccacaggagaggcattgattgtcatggtctgcaattcttttgcattctttaaaatatactttgcaaagtgaaagt |
211 |
Q |
| |
|
|| |||||| |||||||||||||||||| || ||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
11375373 |
agaatttggtgctttatatttatatccatagaagaggcattgattgtcatgatctgcaatacttttgcattcttcaaaatatactttgcaaactgaaagt |
11375274 |
T |
|
| Q |
212 |
cgcaattcatgcctttataacctataagggaacatgttttaagttgagatgaaagacattctggaacagtcggttgatccatccaatcaatatctttaat |
311 |
Q |
| |
|
|||| |||| |||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||| || | ||||| ||| |
|
|
| T |
11375273 |
cgcagttcacgcctctataacctttaagggaacatgttttaagctgagatgaaagacattctggaacaataggtgtatccatccgatagacatcttcaat |
11375174 |
T |
|
| Q |
312 |
tccattcccatcacgatcgagaaccctatcaacatcaaacaattttcttagaaaaagaaatcaaaattaaggaagtaaatttaaataaattatcatcatt |
411 |
Q |
| |
|
| ||| | |||| | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11375173 |
tttatttcgatca----ctagaaccctgtcaacatcagacaattttcttagaaaaagaaatcaaaattaaggaagtaaaattaaataaattatcatcatt |
11375078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 300
Target Start/End: Complemental strand, 12652817 - 12652599
Alignment:
| Q |
82 |
gagccccttggacacaaagataacttgattagcatttggagctttatatttatatccacaggagaggcattgattgtcatggtctgcaattcttttgcat |
181 |
Q |
| |
|
|||||||| |||||| | ||||||| | ||||||||| |||||||||| ||||| || || || ||| ||||||||||||| || | | ||||||||| |
|
|
| T |
12652817 |
gagcccctaagacacagatataacttcgtaagcatttggtgctttatattgatatcaactggtgaagcagtgattgtcatggtgtggagtacttttgcat |
12652718 |
T |
|
| Q |
182 |
tctttaaaatatactttgcaaagtgaaagtcgcaattcatgcctttataacctataagggaacatgttttaagttgagatgaaagacattctggaacagt |
281 |
Q |
| |
|
|||| ||||| |||| |||||| ||||| ||| | ||||| ||||||||||||||||| ||||||||| |||| | ||| |||| |||| || |||| | |
|
|
| T |
12652717 |
tcttcaaaatgtactctgcaaactgaaactcggacttcatacctttataacctataagtgaacatgttctaagctcggataaaaggcattttgaaacaat |
12652618 |
T |
|
| Q |
282 |
cggttgatccatccaatca |
300 |
Q |
| |
|
||| | |||||||||||| |
|
|
| T |
12652617 |
tggtgggtccatccaatca |
12652599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 200
Target Start/End: Complemental strand, 12647488 - 12647326
Alignment:
| Q |
38 |
catgccctaaccttaatcaatgaaatgaaattttatatgtagttgagccccttggacacaaagataacttgattagcatttggagctttatatttatatc |
137 |
Q |
| |
|
|||| ||||||||| |||||| |||||||| ||| | |||| |||||| ||||||| ||||||| || |||| ||||||| |||||||||| ||||| |
|
|
| T |
12647488 |
catgacctaacctttatcaataaaatgaaaatttgcacgtagcagagccctttggacatgaagataatttcattatcatttggtgctttatattcatatc |
12647389 |
T |
|
| Q |
138 |
cacaggagaggcattgattgtcatggtctgcaattcttttgcattctttaaaatatactttgc |
200 |
Q |
| |
|
||| || |||||| | ||||||||||| ||| | ||||||||||||| | |||||||||||| |
|
|
| T |
12647388 |
caccggcgaggcaattattgtcatggtgcgcattacttttgcattcttaataatatactttgc |
12647326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 266
Target Start/End: Complemental strand, 12486963 - 12486758
Alignment:
| Q |
61 |
aatgaaattttatatgtagttgagccccttggacacaaagataacttgattagcatttggagctttatatttatatccacaggagaggcattgattgtca |
160 |
Q |
| |
|
||||||| |||| ||| | | ||||||||||||||||||||||| | |||||||||||| |||||| | ||| |||| | ||||||||| | ||||||| |
|
|
| T |
12486963 |
aatgaaagtttacatgcaatagagccccttggacacaaagataaatccattagcatttggtgctttaaagttaaatcccctggagaggcactaattgtca |
12486864 |
T |
|
| Q |
161 |
tggtctgcaattcttttgcattctttaaaatatactttgcaaagtgaaagtcgcaattcatgcctttataacctataagggaacatgttttaagttgaga |
260 |
Q |
| |
|
| || ||| | || |||||||| |||| ||||| |||||| |||| || || ||||||||||| ||| |||||| || |||||| | |||||||| |
|
|
| T |
12486863 |
tcgtgcgcagtaagttggcattcttcaaaacatactctgcaaactgaagctcacacttcatgcctttgtaatatataagcgagcatgttcttagttgaga |
12486764 |
T |
|
| Q |
261 |
tgaaag |
266 |
Q |
| |
|
||||| |
|
|
| T |
12486763 |
ggaaag |
12486758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 266
Target Start/End: Complemental strand, 12541123 - 12540918
Alignment:
| Q |
61 |
aatgaaattttatatgtagttgagccccttggacacaaagataacttgattagcatttggagctttatatttatatccacaggagaggcattgattgtca |
160 |
Q |
| |
|
||||||| |||| ||| | | ||||||||||||||||||||||| | |||||||||||| |||||| | ||| |||| | ||||||||| | ||||||| |
|
|
| T |
12541123 |
aatgaaagtttacatgcaatagagccccttggacacaaagataaatccattagcatttggtgctttaaagttaaatcccctggagaggcactaattgtca |
12541024 |
T |
|
| Q |
161 |
tggtctgcaattcttttgcattctttaaaatatactttgcaaagtgaaagtcgcaattcatgcctttataacctataagggaacatgttttaagttgaga |
260 |
Q |
| |
|
| || ||| | || |||||||| |||| ||||| |||||| |||| || || ||||||||||| ||| |||||| || |||||| | |||||||| |
|
|
| T |
12541023 |
tcgtgcgcagtaagttggcattcttcaaaacatactctgcaaactgaagctcacacttcatgcctttgtaatatataagcgagcatgttcttagttgaga |
12540924 |
T |
|
| Q |
261 |
tgaaag |
266 |
Q |
| |
|
||||| |
|
|
| T |
12540923 |
ggaaag |
12540918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 266
Target Start/End: Complemental strand, 12508395 - 12508190
Alignment:
| Q |
61 |
aatgaaattttatatgtagttgagccccttggacacaaagataacttgattagcatttggagctttatatttatatccacaggagaggcattgattgtca |
160 |
Q |
| |
|
||||||| |||| || ||| ||||||||||||||||||||||| | |||||||||||| |||||| | ||| |||| | ||||||||| | ||||||| |
|
|
| T |
12508395 |
aatgaaagtttacatccagtagagccccttggacacaaagataaatccattagcatttggtgctttaaagttaaatcccctggagaggcactaattgtca |
12508296 |
T |
|
| Q |
161 |
tggtctgcaattcttttgcattctttaaaatatactttgcaaagtgaaagtcgcaattcatgcctttataacctataagggaacatgttttaagttgaga |
260 |
Q |
| |
|
| || || | || |||||||| |||| ||||| |||||| |||| || || ||||||||||| ||| |||||| || |||||| | |||||||| |
|
|
| T |
12508295 |
tcgtgcacagtaagttggcattcttcaaaacatactctgcaaactgaagctcacacttcatgcctttgtaatatataagcgagcatgttcttagttgaga |
12508196 |
T |
|
| Q |
261 |
tgaaag |
266 |
Q |
| |
|
||||| |
|
|
| T |
12508195 |
ggaaag |
12508190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 12623281 - 12623343
Alignment:
| Q |
217 |
ttcatgcctttataacctataagggaacatgttttaagttgagatgaaagacattctggaaca |
279 |
Q |
| |
|
|||||||||||| || ||||||| || ||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
12623281 |
ttcatgcctttaaaagctataagcgagcatgttttaagctgagttgaaagacattatggaaca |
12623343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 38 - 279
Target Start/End: Original strand, 15329295 - 15329536
Alignment:
| Q |
38 |
catgccctaaccttaatcaatgaaatgaaattttatatgtagttgagccccttggacacaaagataacttgattagcatttggagctttatatttatatc |
137 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | | ||||||| |||||||||||||||| |||||| || |||||||||||| ||| ||||||||||| |
|
|
| T |
15329295 |
catgccctaaccttgctcaatcaaatgaaagtacacatgtagtagagccccttggacacagagataatttcattagcatttggtacttcatatttatatc |
15329394 |
T |
|
| Q |
138 |
cacaggagaggcattgattgtcatggtctgcaattcttttgcattctttaaaatatactttgcaaagtgaaagtcgcaattcatgcctttataacctata |
237 |
Q |
| |
|
||| |||||||||| ||| ||||||| |||||| ||||||| ||||| || ||||||| | |||| |||| || || ||||||||||||||||||||| |
|
|
| T |
15329395 |
cacgagagaggcattaattttcatggtgtgcaatacttttgcgttcttcaatatatactctacaaactgaagctcacatttcatgcctttataacctata |
15329494 |
T |
|
| Q |
238 |
agggaacatgttttaagttgagatgaaagacattctggaaca |
279 |
Q |
| |
|
| || |||||| |||| || |||||||||||||||| |||| |
|
|
| T |
15329495 |
atcgagcatgttctaagctgggatgaaagacattctgaaaca |
15329536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 14987365 - 14987444
Alignment:
| Q |
82 |
gagccccttggacacaaagataacttgattagcatttggagctttatatttatatccacaggagaggcattgattgtcat |
161 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| ||||||| ||| ||| ||| |||||| || |||||||| |
|
|
| T |
14987365 |
gagccccttggacacaaagataaatccattagcatttggtactttatagttaaatcttcagaagaggcgttaattgtcat |
14987444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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