View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9420_low_1 (Length: 678)

Name: NF9420_low_1
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9420_low_1
NF9420_low_1
[»] chr8 (1 HSPs)
chr8 (18-669)||(30239540-30240189)


Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 669
Target Start/End: Original strand, 30239540 - 30240189
Alignment:
Q  18 tgagtttggtcataggtggtataaaaactcaacccaagtaattggatggtagggttggattgattcagtcggtgtcatgaaaagatnnnnnnntaatctg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  30239540 tgagtttggtcataggtggtataaaaactcaacccaagtaattggatggtagggttggattgattcagtcggtgtcatgaaaagataaaaaaataatctg 30239639  T
Q  118 accgatgaaaatgtttcattttgtttggacttggttnnnnnnntggtcagaatcagagcacttccatgagcactaaaaatcccacaatatggaccatttg 217  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30239640 accgatgaaaatgtttcattttgtttggacttggttaaaaaaatggtcagaatcagagcacttccatgagcactaaaaatcccacaatatggaccatttg 30239739  T
Q  218 agcagaatattaaatgcagtgtagaaataaatggagcttgtgaagagaatgaaccagaagagtagttattattcaaatattggagccaataggtatgagt 317  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30239740 agcagaatattaaatgcaatgtagaaataaatggagcctgtgaagagaatgaaccagaagagtagttattattcaaatattggagccaataggtatgagt 30239839  T
Q  318 ttgtgacattttggtgt--ggatggatggaaccttgtggtccaaaccccattcacccaattcgcagtggattacaggtagggtggtgatcataaccccta 415  Q
    ||||||||||||||| |  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30239840 ttgtgacattttggttttggtgtggatggaaccttgtggtccaaaccccattcacccaattcgcagtggattacaggtagggtggtgatcataaccccta 30239939  T
Q  416 tgagtgttttctactatgatatagaaggggacattattgatgaatataataatattatcacattcttcgatccactggcaatggcgatggatatagtaag 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||    
T  30239940 tgagtgttttctactatgatatagaaggggacattattgatgaatataataa---tatcacattcttcaatccactggcaatggcgatggatatagtaag 30240036  T
Q  516 ttatattagaactttatcttccacttataatcattcagtggtagtgaatgnnnnnnnnnnnntgaaacacgtttttgcatccatttgtcacattgcatat 615  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  30240037 ttatactagaactttatcttccactt-taatcattcagtggtagtgaatggaaaaataaaaatgaaacacgtttttgcatccatttgtcacattgcatat 30240135  T
Q  616 ttctttgcaaaaatagtagttaaaagtctctaggtagtaataaagtagtataat 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30240136 ttctttgcaaaaatagtagttaaaagtctctaggtagtaataaagtagtataat 30240189  T

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