View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9420_low_10 (Length: 393)

Name: NF9420_low_10
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9420_low_10
NF9420_low_10
[»] chr2 (2 HSPs)
chr2 (106-390)||(37881121-37881405)
chr2 (114-201)||(2892261-2892348)
[»] chr4 (4 HSPs)
chr4 (118-244)||(36246513-36246639)
chr4 (150-205)||(31941926-31941981)
chr4 (150-205)||(32000885-32000940)
chr4 (143-176)||(24358428-24358461)
[»] chr3 (3 HSPs)
chr3 (143-186)||(20732618-20732661)
chr3 (143-186)||(20740354-20740397)
chr3 (131-192)||(44674739-44674800)
[»] chr8 (3 HSPs)
chr8 (140-186)||(9622084-9622130)
chr8 (146-192)||(39916906-39916952)
chr8 (143-183)||(41350395-41350435)
[»] chr1 (5 HSPs)
chr1 (118-186)||(45594286-45594354)
chr1 (143-182)||(17118247-17118286)
chr1 (119-171)||(16127083-16127135)
chr1 (119-171)||(16138173-16138225)
chr1 (142-182)||(38720068-38720108)
[»] chr7 (1 HSPs)
chr7 (143-186)||(28944891-28944934)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 106 - 390
Target Start/End: Complemental strand, 37881405 - 37881121
Alignment:
Q  106 ccatgaacattataggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37881405 ccatgaacattataggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 37881306  T
Q  206 cttcgaagtggaattgatcctgttactcatactccacgtctcgatcatctatttgacatgtcctccattaatattctcagatcagctttattaggaggaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37881305 cttcgaagtggaattgatcctgttactcatactccacgtctcgatcatctatttgacatgtcctccattaatattctcagatcagctttattaggaggaa 37881206  T
Q  306 ccaacccaatgaacccatcatttctgaacttattaggtggtgctcaagctttcatgaaccctggattgttaaagctagctgcaac 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37881205 ccaacccaatgaacccatcatttctgaacttattaggtggtgctcaagctttcatgaaccctgaattgttaaagctagctgcaac 37881121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 2892348 - 2892261
Alignment:
Q  114 attataggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaag 201  Q
    |||||||||||||||| || ||  || ||||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||||||    
T  2892348 attataggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaag 2892261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 36246513 - 36246639
Alignment:
Q  118 taggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagactacttcgaagtgga 217  Q
    |||||||||| | || ||| ||||  |||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||  |  |||  |||    
T  36246513 taggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatggga 36246612  T
Q  218 attgatcctgttactcatactccacgt 244  Q
    ||||||||||| || |||| |||||||    
T  36246613 attgatcctgtgacacataatccacgt 36246639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 31941926 - 31941981
Alignment:
Q  150 gaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 205  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||||    
T  31941926 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagacta 31941981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 32000885 - 32000940
Alignment:
Q  150 gaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 205  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||||    
T  32000885 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagacta 32000940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 24358461 - 24358428
Alignment:
Q  143 ttacccggaagaacagacaatgaaataaagaact 176  Q
    |||||||||||||||||||||||||| |||||||    
T  24358461 ttacccggaagaacagacaatgaaatcaagaact 24358428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 20732661 - 20732618
Alignment:
Q  143 ttacccggaagaacagacaatgaaataaagaactactggaacac 186  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  20732661 ttacctggaagaacagacaatgaaataaagaactactggaacac 20732618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 20740397 - 20740354
Alignment:
Q  143 ttacccggaagaacagacaatgaaataaagaactactggaacac 186  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  20740397 ttacctggaagaacagacaatgaaataaagaactactggaacac 20740354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 44674739 - 44674800
Alignment:
Q  131 atagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacat 192  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||    
T  44674739 atagctgctagattaccaggaagaacagataatgagatcaagaattactggaacactcacat 44674800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 9622084 - 9622130
Alignment:
Q  140 agattacccggaagaacagacaatgaaataaagaactactggaacac 186  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  9622084 agattaccaggacgaacagacaatgaaataaagaactactggaacac 9622130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 39916906 - 39916952
Alignment:
Q  146 cccggaagaacagacaatgaaataaagaactactggaacacgcacat 192  Q
    |||||||||||||||||||| || |||||||| |||||||| |||||    
T  39916906 cccggaagaacagacaatgagatcaagaactattggaacactcacat 39916952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 41350435 - 41350395
Alignment:
Q  143 ttacccggaagaacagacaatgaaataaagaactactggaa 183  Q
    ||||| || ||||||||||||||||||||||| ||||||||    
T  41350435 ttacctggtagaacagacaatgaaataaagaattactggaa 41350395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 45594354 - 45594286
Alignment:
Q  118 taggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacac 186  Q
    ||||||| |||||||||| |||  | |||| ||||||||||||||||| || |||||||| ||||||||    
T  45594354 taggtgggctgctatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 45594286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 17118286 - 17118247
Alignment:
Q  143 ttacccggaagaacagacaatgaaataaagaactactgga 182  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  17118286 ttaccaggaagaacagacaatgaaataaagaattactgga 17118247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 16127135 - 16127083
Alignment:
Q  119 aggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaa 171  Q
    |||||||| || ||||| || | |||||| |||||||||||||||||||||||    
T  16127135 aggtggtcagcaatagcagcaaaattacctggaagaacagacaatgaaataaa 16127083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 16138225 - 16138173
Alignment:
Q  119 aggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaa 171  Q
    |||||||| || ||||| || | |||||| |||||||||||||||||||||||    
T  16138225 aggtggtcagccatagcagcaaaattacctggaagaacagacaatgaaataaa 16138173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 38720068 - 38720108
Alignment:
Q  142 attacccggaagaacagacaatgaaataaagaactactgga 182  Q
    |||||| |||||||| |||||||||||||||||||| ||||    
T  38720068 attaccgggaagaaccgacaatgaaataaagaactattgga 38720108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 28944934 - 28944891
Alignment:
Q  143 ttacccggaagaacagacaatgaaataaagaactactggaacac 186  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||    
T  28944934 ttacccggaagaacagacaatgagataaagaacttttggaacac 28944891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University