View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_14 (Length: 355)
Name: NF9420_low_14
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 12365919 - 12365579
Alignment:
| Q |
1 |
tattagtcgttgaatataggctcgtgacttgaggacgggtttggatcaggtgaagagtagtagctctgctatgagaagtagctcctagactggcgtgact |
100 |
Q |
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| T |
12365919 |
tattagtctttgaagatagactcgtgacttggggacatgtttggatcagacgaagagtagtagcagtcctctgagaagtagctcctagactggcatgact |
12365820 |
T |
|
| Q |
101 |
catactgccagctgtcccctattagttcctttattgtctcttcatcaagattctcggaaggctcaatatccattggattttcttcaaaattcacttgtgt |
200 |
Q |
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| T |
12365819 |
catactgccagctgtccgctattagttgctttatggtctcttcatcaagattctctaaaggctcaatatccgttggattttcttcaaaattcatttgtgt |
12365720 |
T |
|
| Q |
201 |
gaactgttgttcaatattttcctgaaagtcttgttctggttgagatgcttgtttggagctttcccgaatttcttgaggattaactgatttgaattgcggt |
300 |
Q |
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| T |
12365719 |
gaactgttgttcaatattttcctgaaagtcttgttctggttgagatgcctgtctagagctttccccaatttcttgaggattgactggtttgaattgcggt |
12365620 |
T |
|
| Q |
301 |
ggaagattcccataacttatacatgtagtatcaatttgagt |
341 |
Q |
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| T |
12365619 |
ggaagattcccatgacttatacatgtagtatcaatttgagt |
12365579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 657544 - 657492
Alignment:
| Q |
165 |
aatatccattggattttcttcaaaattcacttgtgtgaactgttgttcaatat |
217 |
Q |
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| T |
657544 |
aatattcattggattttcttcaaaattcattttcgtgaattgttgttcaatat |
657492 |
T |
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