View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9420_low_15 (Length: 344)
Name: NF9420_low_15
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_15 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 11313062 - 11312735
Alignment:
| Q |
17 |
ctatgttcatggctactcggaaccatgaaggaagaagtattgaccatgatcaatggtgacactgcgtatgagatctggaccttcgttaaagaacatctac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
11313062 |
ctatgttcatggctactcggaaccatgaaggaagaagtgttgaccatgatcaatggtgacactgcgtatgagatctggacctccgttaaagaacagctac |
11312963 |
T |
|
| Q |
117 |
ttccagccacgatagagaaggcacgaagtttgaagaacatgttgatgacaatcaaaaaggggtcacgaacccttgaagaatatctacgcgaattcaaatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11312962 |
ttccagccacgatagagaaggcacgaagtttgaagaacatgttgatgacaatcaaaaaggggtcacgaacccttgaagaatatctacgcgaattcaaatc |
11312863 |
T |
|
| Q |
217 |
aatttgtgacaatcttgctgctataaaagaaacggtttcagaccaagacaaagtgtttcaatttgcttatggacttggaccaagctatgaaacttttcgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11312862 |
aatttgtgacaatcttgctgctataaaagaaccggtttctgaccaagacaaagtgtttcaatttgcttatggacttggaccaagctatgaaacttttcgt |
11312763 |
T |
|
| Q |
317 |
gttgctatgcttactaaaccgccttacc |
344 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
11312762 |
gttgctatgcttactaaaccgccttacc |
11312735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University