View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_18 (Length: 325)
Name: NF9420_low_18
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 2059518 - 2059215
Alignment:
| Q |
6 |
gtttggtgttcgaaagattgtagaatacggaccaacgattattcccaagagcattcgagttatagcaagtttactaggaaaacatcga--tttaacataa |
103 |
Q |
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| T |
2059518 |
gtttggtgttcgaaagattgtagaatacggaccaacgattattcccaagagcattcgagttatagcaagtttactaggaaaacatcgaagttttgta-aa |
2059420 |
T |
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| Q |
104 |
tcaaatgaccattgtttacgataagtgaatgtttatactttgtaatttcatccatagcatgaaatggaagaaaccacatcaaagttctagttcacatcat |
203 |
Q |
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| T |
2059419 |
tcaaatgaccattgtttacgataagtgaatgtttatactttgtaatt-catccatagcatgaaatagaagaaaccacatcaaagttctagttcacatcat |
2059321 |
T |
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| Q |
204 |
aatcttgtggaattgatgaataatagctactccaccatgaactcaccaagttcattcaactatttatatgaactgatatttttacttatttatatgatct |
303 |
Q |
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| T |
2059320 |
aatcttgtggaattgatgaataatagctactccaccatgaactcaccaagttcattcaactatttatatgaactgatatttttacttattaatatgagct |
2059221 |
T |
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| Q |
304 |
agtaat |
309 |
Q |
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|||||| |
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| T |
2059220 |
agtaat |
2059215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 2048396 - 2048300
Alignment:
| Q |
128 |
gtgaatgtttatactttgtaatttcatccatagcatgaaatggaagaaaccacatcaaagttctagttcacatcataatcttgtggaattgatgaataa |
226 |
Q |
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| T |
2048396 |
gtgaatgtttatactttgtaatt-catccatagcatgaaatagaagaaacgacatcatatttctagttcatgtcat-atcttgtggaattgatgaataa |
2048300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 2035116 - 2035029
Alignment:
| Q |
106 |
aaatgaccattgtttacgataagtgaatgtttatactttgtaatttcatccatagcatgaaatggaagaaaccacatcaaagttctagttca |
197 |
Q |
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| T |
2035116 |
aaatgacatttgttttcaataagtgaatgtttatactttttaa-ttcatccatagcatgaaat---agaaaccacaccatatttctagttca |
2035029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 2039194 - 2039153
Alignment:
| Q |
126 |
aagtgaatgtttatactttgtaatttcatccatagcatgaaat |
168 |
Q |
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| T |
2039194 |
aagtgaatgtttatgctttgtaa-ttcatccatagcatgaaat |
2039153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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