View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_19 (Length: 319)
Name: NF9420_low_19
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 36950863 - 36950663
Alignment:
| Q |
13 |
tagaaccgtaatattaaatgnnnnnnncttgaatttgtgccgcagtatcaaacaaaggctaagatgtttgagaatacaaaagaaatgagcacgnnnnnnn |
112 |
Q |
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| T |
36950863 |
tagaaccgtaatattaaatgaaaaaaacttgaatttgtgccgcagtatcaaacaaaggctaagatgtttgagaatacaaaagaaatgagcaccaaaaaaa |
36950764 |
T |
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| Q |
113 |
cctcttcttgttgcaattgttagagaaattgttgttggaggaggatgctgcaatacttgatcaatgaataaattgatgaggacaacaaaggctaaagcat |
212 |
Q |
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| T |
36950763 |
cctcttcttgttgcaattgttagagaaattgttgttggaggaggatgctgcaacacttgaacaatgaataaattgacgaggacaacaaaggctaaagcat |
36950664 |
T |
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| Q |
213 |
g |
213 |
Q |
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| T |
36950663 |
g |
36950663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 36950615 - 36950534
Alignment:
| Q |
220 |
tatgtatatgttggatgtaagagtgtataatagcgaataccattccgtatattttgaaaagcttaatgtgatttgtaaaaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950615 |
tatgtatatgttggatgtaagagtgtataatagcaaataccattccgtatattttgaaaagcttaatgtgatttgtaaaaat |
36950534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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