View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_22 (Length: 318)
Name: NF9420_low_22
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 14308910 - 14309043
Alignment:
| Q |
54 |
agttaatggggtggtggctgtgtagagattatttataatggatggatatttaactttcttagtcaatcaaacttatttgtttacttactttgttcattaa |
153 |
Q |
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| T |
14308910 |
agttgatggggtggtggctgtttagagattatttataatggatggatatttaactttct--------caaacttatttgtttacttactttgttcattaa |
14309001 |
T |
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| Q |
154 |
atatgatctctacctcacattttcaatagtgcaaagtcttat |
195 |
Q |
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| T |
14309002 |
atatgatctctacctcacattttcgatagtgcaaagtcttat |
14309043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 219 - 307
Target Start/End: Original strand, 14309225 - 14309313
Alignment:
| Q |
219 |
ttatcataatttgtatgaactaaagattataatatttgataatttgtaattaagtctcttcattctacatttccaattcaattcccttt |
307 |
Q |
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| T |
14309225 |
ttatcataatttatatgaactacgaattacgatatttgataatttgtaattaagtctcttcattctacatttccaattcaattcccttt |
14309313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 14305974 - 14306108
Alignment:
| Q |
42 |
cctcatgaaactagttaatggggtggtggctgtgtagagattatttataatggatggatatttaactttcttagtcaatcaaact----tatttgtttac |
137 |
Q |
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| T |
14305974 |
cctcatgaaactagttagtggggtggtggttgtgcagagattatttata----atggataattacttttcttagtcattcaaattttgctgtttgtgtac |
14306069 |
T |
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| Q |
138 |
ttactttgttcattaaatatgatctctacctcacatttt |
176 |
Q |
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| T |
14306070 |
ttattttgttcatcaaatatgctctctacatcacatttt |
14306108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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