View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_24 (Length: 305)
Name: NF9420_low_24
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 36901696 - 36901418
Alignment:
| Q |
18 |
cattttgtctcgttcacttttttcttcaatcatcctgcttgttccaactgtcactgtcaattcaaactatggagggttaaaatgccattaatcttctttg |
117 |
Q |
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| T |
36901696 |
cattttgtctcgttcacttttttcttcaatcatcctgcttgttccaactgtcactgtcaattcaaactatggagggttaaaatgccattaatcttctttg |
36901597 |
T |
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| Q |
118 |
tatatattaccatccgtttcaaaatagcaatattaccaaaatattttcatggattagagagaatgtacagaggagagattagattcatcatggaaagtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36901596 |
tatatattaccatccgtttcaaaatagcaatattaccataatattttcatggattagagagaatgtacagaggagagattagattcatcatggaaagtgt |
36901497 |
T |
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| Q |
218 |
tagataataagatttagcttatgttattaggccttttatgtttatcagttagtagaatccattaggtttgtagtattat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
36901496 |
tagataataagatttagcttatgttattaggccttttatctttatcagttagtagaatccattaggtttgtaatattat |
36901418 |
T |
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