View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_25 (Length: 268)
Name: NF9420_low_25
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 15022201 - 15022452
Alignment:
| Q |
1 |
attgggtggctatgatctcaccttcaaattccaagtaagaatattacattgatgatgaaaatgaatgttagttaaaaccattgctataatgttaattaat |
100 |
Q |
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| T |
15022201 |
attgggtggctatgatctcaccttcaaattccaagtaagaatattacattgatgatgaaaatgaatgttagttaaaaccattgctataatgttaattaat |
15022300 |
T |
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| Q |
101 |
tccaaattatatgaactatgaaattggatttaatttattcttttaattgattatatgaagtgttaaagcttgtcttctcaatgagttctattatctacaa |
200 |
Q |
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| T |
15022301 |
tccaaattatatgaactatgaaattggatttaatttattcttttaattgattatatgaagtgttaaagcttgtcttctcaatgagttctattatctacaa |
15022400 |
T |
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| Q |
201 |
actggtgatactgcaaaacttcctctactttgccattaccctgtcaaggtat |
252 |
Q |
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| T |
15022401 |
actggtgatactgcaaaacttcctctactttgccattaccctgtcaaggtat |
15022452 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 21363395 - 21363464
Alignment:
| Q |
186 |
ttctattatctacaaactggtgatactgca---aaacttcctctactttgccattaccctgtcaaggtat |
252 |
Q |
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| T |
21363395 |
ttctattatcaacaaactggtgatactgctgccatacttcctctgctttgccattaccctgtcaaggtat |
21363464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21363193 - 21363233
Alignment:
| Q |
1 |
attgggtggctatgatctcaccttcaaattccaagtaagaa |
41 |
Q |
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| T |
21363193 |
attgggttgctatgatctcaccttcaaattccaagtaagaa |
21363233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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