View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_26 (Length: 267)
Name: NF9420_low_26
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 13656815 - 13657017
Alignment:
| Q |
50 |
aatgatgatattcaagctcttttagaatgttaccctgagcttcaattcaagaccatctctgattgtcacagtgaggagaaacatcctggatttggagaaa |
149 |
Q |
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| T |
13656815 |
aatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagaccatctctgattttcacagtgaggagaaacatcctggatttggagaaa |
13656914 |
T |
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| Q |
150 |
aggtaggtgatgtaattttgtcactgagattgtatggtaagtctattttgagagatattattgtgtctgagaaaataagttgcattattttggatggaat |
249 |
Q |
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| T |
13656915 |
aggtaggtgatgtaattttgtcactgagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaat |
13657014 |
T |
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| Q |
250 |
att |
252 |
Q |
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||| |
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| T |
13657015 |
att |
13657017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 50 - 252
Target Start/End: Original strand, 13646489 - 13646691
Alignment:
| Q |
50 |
aatgatgatattcaagctcttttagaatgttaccctgagcttcaattcaagaccatctctgattgtcacagtgaggagaaacatcctggatttggagaaa |
149 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||| ||||| ||||||||||||||||||| |
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| T |
13646489 |
aatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagactatctctgattttcatagtgaagagaagcatcctggatttggagaaa |
13646588 |
T |
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| Q |
150 |
aggtaggtgatgtaattttgtcactgagattgtatggtaagtctattttgagagatattattgtgtctgagaaaataagttgcattattttggatggaat |
249 |
Q |
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| T |
13646589 |
ggataggtgatgtaattacgtcactgagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattattttggatggaat |
13646688 |
T |
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| Q |
250 |
att |
252 |
Q |
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||| |
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| T |
13646689 |
att |
13646691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 247
Target Start/End: Original strand, 13651595 - 13651767
Alignment:
| Q |
75 |
aatgttaccctgagcttcaattcaagaccatctctgattgtcacagtgaggagaaacatcctggatttggagaaaaggtaggtgatgtaattttgtcact |
174 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||| | | ||||||| |||||||||||||||||||| | | |||||||||| || | |
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| T |
13651595 |
aatgttaccctaagcttcaattcaagaccatctctgattttcaaaataaggagaagcatcctggatttggagaaaacattgtagatgtaatttcctccat |
13651694 |
T |
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| Q |
175 |
gagattgtatggtaagtctattttgagagatattattgtgtctgagaaaataagttgcattattttggatgga |
247 |
Q |
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| T |
13651695 |
aaatatgtatggtaagccttctttgagagacattattgtctctgagaaaataagttgcattattttagatgga |
13651767 |
T |
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