View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_29 (Length: 263)
Name: NF9420_low_29
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 31860248 - 31859993
Alignment:
| Q |
1 |
ctataaaattatatcagttgcatgttaagttaacatgagcaagaaaatcatgatcttattttagcatagtaggcttttcttgttgagctctataaactca |
100 |
Q |
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| T |
31860248 |
ctataaaattatatcagttgcatgttaa-----catgagcaagaaaatcatgatcttattttagcatagtaggtttttcttgttgagctctataaactca |
31860154 |
T |
|
| Q |
101 |
cttgcatttgnnnnnnnnn--cttcctaatgttcattttatctccttaatacaggtaaataagatgcgtggagaaatcaagattgtcaaaaaggaaggcc |
198 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31860153 |
cttgcatttgtttttttttttcttcctaatgttcattttatctccttaatacaggttaataagatgggtggagaaatcaagattgtcaaaaaggaaggcc |
31860054 |
T |
|
| Q |
199 |
caggaacactaatgcgattatacatgcaactcaccgcacccgtggatgccacagaacaaca |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31860053 |
caggaacactaatgcgattatacatgcaactcaccgcacccgtggatgccacagaacaaca |
31859993 |
T |
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