View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_3 (Length: 559)
Name: NF9420_low_3
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_3 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Original strand, 2193434 - 2193960
Alignment:
| Q |
18 |
agtataacaatcttaagtataaaaatatcaattactcatgtcagatagctaaaaggctcgttacaacttacctaacaacaaaataaaatgcctaaaggat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193434 |
agtataacaatcttaagtataaaaatatcaattactcatgccagatagctaaaaggctcgttacaacttacctaacaacaaaataaaatgcctaaaggat |
2193533 |
T |
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| Q |
118 |
tcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatagagttataaaaatcgattttaccatgaaaaaactcttatcataatccagaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193534 |
tcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatagagttataaaaatcgattttaccatgaaaaaactcttatcataatccagaaat |
2193633 |
T |
|
| Q |
218 |
tcaacatcaacttatgatcatccaattgtttatccgatcaactnnnnnnnttataaacattttttcttaaatagcaagagaatgaaattatagaaaatac |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193634 |
tcaacatcaacttattatcatccaattgtttatccgatcaactaaaaaaattataaacattttttcttaaatagcaagagaatgaaattatagaaaatac |
2193733 |
T |
|
| Q |
318 |
ctttcctttatcaccatctacacacaactcatcagacttagatggaaaattattcacacatttaacttgattttattgatcaccatcgagaaccacacaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2193734 |
ctttcctttatcaccatctacacacaactcatcagacttagatggaaaattattcacacatttaacttgattttattgatcaccatcgagaaccacacaa |
2193833 |
T |
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| Q |
418 |
tcatcatcgtcaaactggaaaaaagatgaaacaacttggaaaacttggaggtatacacacgttgttgaatcacagatggcttctcaaagtcttgttaaca |
517 |
Q |
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| T |
2193834 |
tcatcatcgtcaaactggaaaaaagatgaaac---------aacttggaggtatacacacgttgttcaatcacagatggcttctcaaagtcgtgttaaca |
2193924 |
T |
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| Q |
518 |
gattccacacagtaaaccgtctttgatgtccatctc |
553 |
Q |
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| T |
2193925 |
gattccacacagtaaaccgtcttttatttccatctc |
2193960 |
T |
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Back To:
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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 258551 - 258496
Alignment:
| Q |
110 |
taaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag |
165 |
Q |
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| T |
258551 |
taaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag |
258496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 14174513 - 14174568
Alignment:
| Q |
110 |
taaaggattcatatttgaatgaagagaagtagaattcaaaatgtttttctgcatag |
165 |
Q |
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| T |
14174513 |
taaaggattcccatttgaatgaagaaaagtaatattcaaaatgtttttcagcatag |
14174568 |
T |
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