View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_30 (Length: 260)
Name: NF9420_low_30
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_30 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 34174387 - 34174638
Alignment:
| Q |
9 |
ataattctctgctaactttggacacattcttgtcctacaatctattggtaacctgaaaatggtattttcttctggtttaagattttgtttacttatagtt |
108 |
Q |
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| T |
34174387 |
ataattctctgctaactttggacacattcttgtcctacaatctattggtaacctgaaaatggtattttcttctggtttaagattttgtttacttatagtt |
34174486 |
T |
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| Q |
109 |
aaacgccaaaagtggcttaaaagcgcttgcaatgaagatattattattttatcaccaccgcaactactactaatttctgcattagcttttgatttgagtt |
208 |
Q |
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| T |
34174487 |
aaacgccaaaagtggcttaaaagtgcttgcaatgaagatattattattttatcaccaccgcaactactactaatttctgcattagcttttgatttgagtt |
34174586 |
T |
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| Q |
209 |
gcagaatttgttcctttgtgaagtggaagattcgatgaggatgtgatacttc |
260 |
Q |
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| T |
34174587 |
gcagaatttgttcctttgtgaagtggaagattcgatgaggatgtgatacttc |
34174638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 39075487 - 39075725
Alignment:
| Q |
9 |
ataattctctgctaactttggacacattcttgtcctacaatctattggtaacctgaaaatggtattttcttctggtttaagattttgtttacttatagtt |
108 |
Q |
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| T |
39075487 |
ataattatcttctaactttggacacattcttgtcctacaatctatgggtaacacgaaagcagacctttcttctggtttaagattttgtttacttataatt |
39075586 |
T |
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| Q |
109 |
aaacgccaaaagtggcttaaaagcgcttgcaatgaagatattattattttatcaccaccgcaactactactaatttctgcattagcttttgatttgagtt |
208 |
Q |
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| T |
39075587 |
aaacgccaaacgtgacttaaaagcgcttgcaatgaagatattattattttctcactactattactactactgatttctgcattagcttttgatttgagtt |
39075686 |
T |
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| Q |
209 |
gcagaatttgttcctttgtgaagtggaagattcgatgag |
247 |
Q |
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| T |
39075687 |
gcagaatttgttccttactaaagtggaagattcgatgag |
39075725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 7398736 - 7398980
Alignment:
| Q |
9 |
ataattctctgctaactttggacacattcttgtcctacaatctattggtaacctgaaaatggtattttcttctggtttaagattttgtttacttatagtt |
108 |
Q |
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|||||||||| |||||||||| ||||||||||| ||||||||||| |||||| ||| | ||||||||| ||| ||||||||||||||||| | |
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| T |
7398736 |
ataattctcttctaactttgggcacattcttgttctacaatctatgggtaacacgaatgccgacctttcttctgaattacgattttgtttacttataaat |
7398835 |
T |
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| Q |
109 |
aaacgccaaaagtggcttaaaagcgcttgcaatgaagatat---tattattttatcaccacc---gcaactac---tactaatttctgcattagcttttg |
199 |
Q |
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| T |
7398836 |
aaacgccaaaggtgacttaaaagcgcttgcaatgaagatatcgttattattttatcactactattgctactaccactactaatttctgcattagcttttg |
7398935 |
T |
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| Q |
200 |
atttgagttgcagaatttgttcctttgtgaagtggaagattcgat |
244 |
Q |
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| T |
7398936 |
atttgagttgcagaatttgttctttagtaaagtggaagattcgat |
7398980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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