View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_38 (Length: 242)
Name: NF9420_low_38
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12366050 - 12366280
Alignment:
| Q |
1 |
tttggtcaaaagtgtcataaaagtgttttccattat--------tataatgcatgccaatagtgttttagtggcatgtgagtgaatagttttatttttgt |
92 |
Q |
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| T |
12366050 |
tttggtcaaaagtgtcataacagtgttttccattataaaattattataatgcatgtcaatagtgttttagtg-catgtgagtgaatagttttatttttgt |
12366148 |
T |
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| Q |
93 |
ccttaatgtatctcgttggctataaaaggagaagagtagtaaaatatttctcacaacttgaatgaaataaatcctagtgtgttttgtgaaaaacattttc |
192 |
Q |
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| T |
12366149 |
ccttaatgtatctccttggctataaaaggagaagagttgtaacatatttcacacaacttgaatgaaataaatcctagtgtgttttatgaaaaacatgttc |
12366248 |
T |
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| Q |
193 |
ttctaaatttctctcttctttctgaaagctct |
224 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
12366249 |
ttctaactttctctcttctttctgaaagctct |
12366280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 19965683 - 19965462
Alignment:
| Q |
5 |
gtcaaaagtgtcataaaagtgttttccattattataatgcatgccaatagtgtttt-agtggcatgtgagtgaatagttttatttttgtccttaatgtat |
103 |
Q |
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| T |
19965683 |
gtcaaaagtgtcataaaaatgtcttccatagttataatgcatgccaatagtgttttcagtggcatgcgagtgaatagttctatctttgtctttagtgtac |
19965584 |
T |
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| Q |
104 |
ctcgttggctataaaaggagaagagtagtaaaatatttctcacaacttgaatgaaat-aaatcctagtgtgttttgtgaaaaacattttcttctaaattt |
202 |
Q |
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| T |
19965583 |
ctcattggctataaaaggagaagaattgtaacatctttctcacaacttgaatcaaataaaatcctagtgtgtttcaagaaaaacatgttcttctaaattt |
19965484 |
T |
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| Q |
203 |
ctctcttctttctgaaagctct |
224 |
Q |
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||||||| |||||||||||||| |
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| T |
19965483 |
ctctcttatttctgaaagctct |
19965462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 657870 - 658068
Alignment:
| Q |
5 |
gtcaaaagtgtcataaaagtgttttccattattataatgcatgccaatagtgttt-tagtggcatgtgagtgaatagttttatttttgtccttaatgtat |
103 |
Q |
| |
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|||||||||||||||| ||| |||||| ||| ||| || | ||||| ||||| ||||| |||||| ||| |||||| | | ||| || ||| ||||| |
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| T |
657870 |
gtcaaaagtgtcataagtatgtcttccataattgtaaagcttttcaataatgtttatagtgacatgtgtgtggatagttgtgtctttatctttagtgtat |
657969 |
T |
|
| Q |
104 |
ctcgttggctataaaaggagaagagtagtaaaatatttctcacaacttgaatgaaat-aaatcctagtgtgttttgtgaaaaacattttcttctaaatt |
201 |
Q |
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||| |||||||||||||||||||||| |||| |||| |||| ||| ||| |||| ||||| ||||||||||| || ||||||| |||||||||||| |
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| T |
657970 |
ctcattggctataaaaggagaagagttgtaacatatccctcataacgaaaatcaaataaaatcgtagtgtgttttatgtaaaacatgttcttctaaatt |
658068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 44669439 - 44669482
Alignment:
| Q |
181 |
aaaaacattttcttctaaatttctctcttctttctgaaagctct |
224 |
Q |
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| T |
44669439 |
aaaaacatgtccttctaaatttctctcttctttatgaaagctct |
44669482 |
T |
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