View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_4 (Length: 485)
Name: NF9420_low_4
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Complemental strand, 34902951 - 34902502
Alignment:
| Q |
19 |
cagagacgaaagagcgcttccaagacaatataggcgtaacaagaccatggaatgaaatgatccaattttctcatttcaaacttccatcatctttctatga |
118 |
Q |
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| T |
34902951 |
cagaggcgaaagagcgcttccaagacaatataggcgtaacaagaccatggaaagaaatgatccaattttctcatttcaaacttccatcatctttctatga |
34902852 |
T |
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| Q |
119 |
cacaattcaaagaatcaacaccaatgccaaacattttcgcgcaaattatgttatcaccatgttgcttactattttccttagcttactagaacaccctatc |
218 |
Q |
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| T |
34902851 |
cacaattcaaagaatcaacaccaatgccaaacattttcgcgcaaattatgttatcaccatgttgcttactattttccttagcttactagaacaccctatc |
34902752 |
T |
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| Q |
219 |
tcattgatcatattaattgtgatgatgattgcatgggtgtatttatatttcctaagagttacacctttggtgatttttgggtatgaaattgatgagagat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34902751 |
tcattgatcatattaattgtgatgatgattgcatgggtgtatttatatttcctaagagttacacctttggtgatttttgggtatgaaattgatgagagat |
34902652 |
T |
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| Q |
319 |
atgtggttatatctttgttgtcgatcaccggcggtttgcttgttctaacggatgtaacacataatgtggaagttggtatgtgttttgccctaggtgttgt |
418 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34902651 |
atgtggttatatctttgttgtcgatcaccgccggtttgctcgttctaacggatgtaacacataatgtggaagttggtatgtgttttgccctaggtgttgt |
34902552 |
T |
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| Q |
419 |
gttgattcatgctgtgttgagagaaacagaagatttgttcacattggatg |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34902551 |
gttgattcatgctgtgttgagagaaacagaagatttgttcacattggatg |
34902502 |
T |
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