View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9420_low_6 (Length: 457)
Name: NF9420_low_6
Description: NF9420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9420_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Complemental strand, 27656548 - 27656113
Alignment:
| Q |
6 |
tgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatttgaggataa |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27656548 |
tgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaattcgaggataa |
27656449 |
T |
|
| Q |
106 |
gctccaccaccatcatccaccaatatcatcaactgtaaatatttttagatcgtcaattaatatcgattgtcagataattaaaaatattttattatcatta |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27656448 |
gctccaccaccatcatccaccaatatcatcaactgtaaatattgttagatcgtcaattaatatcgattgtcagataattaaaaatattttattttcatta |
27656349 |
T |
|
| Q |
206 |
cgactatttctaaagttacacatgtgatttgttatgatttattgatagcgttaaaagtatcttagaaaagtatgtactaaccacgattgtgaggccccta |
305 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27656348 |
tgactacttctaaagttacacatatgatttgttatgatttattgatagcgttaaaagcatcttagaaaagtatgtactaaccacgattgtgaggccccta |
27656249 |
T |
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| Q |
306 |
aatgcatcaagagttgcaaccctacnnnnnnngtgcttaacctcttgctcctttggtacttgctgaactgactctccctctagtgtggtccttatgtctc |
405 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27656248 |
aatgcatcaagagttgcaaccctactttttttgtgcttaatctcttgctcctttggtacttgctgaactgactctccctctagtgtggtccttatgtctc |
27656149 |
T |
|
| Q |
406 |
tctcattctcaattgtatctccaccaccattggttt |
441 |
Q |
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| T |
27656148 |
tctcattctcaattgtatctccaccaccattggttt |
27656113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 41309963 - 41310096
Alignment:
| Q |
6 |
tgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatttgaggataa |
105 |
Q |
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|||||||||||| || || ||||| |||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | | |||| |
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| T |
41309963 |
tgcaagagctatggccacaccaacgatgaaaagaaagaaaggcataacaaaatcagccaaagtacatccattccatggagagtgatcaatgcgtgaataa |
41310062 |
T |
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| Q |
106 |
gctccaccaccatcatccaccaatatcatcaact |
139 |
Q |
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| T |
41310063 |
gctccaccagcatcgtccaccaatatcatcaact |
41310096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 41324654 - 41324762
Alignment:
| Q |
6 |
tgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatttgaggataa |
105 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||| || |||||||| || ||||||||||| |||||||||| ||| || | |||||||| | |||||| |
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| T |
41324654 |
tgcaagggctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatgcgtggataa |
41324753 |
T |
|
| Q |
106 |
gctccacca |
114 |
Q |
| |
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||||||||| |
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| T |
41324754 |
gctccacca |
41324762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 41310313 - 41310359
Alignment:
| Q |
281 |
actaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccc |
327 |
Q |
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||||||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
41310313 |
actaaccacaatggtgaggcccctaaatgcatcaagtgttgcaaccc |
41310359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 928791 - 928719
Alignment:
| Q |
19 |
gcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgat |
91 |
Q |
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||||| |||||||| ||||||||||| |||||||| ||||| || | ||| | |||||||||||||| |||| |
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| T |
928791 |
gcaacaccaacaataaaaaggaaaaatggcataacaaaatctgctattgttaaaccattccatggagaatgat |
928719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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