View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9421_high_13 (Length: 284)
Name: NF9421_high_13
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 36284235 - 36283972
Alignment:
| Q |
21 |
gcgatagatactcccaatcttaataattaacatttgtatgatatctccaatattactcaaaagattattagcacaataattttatttgacccaactgatc |
120 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36284235 |
gcgatacatactcccaatcttaataattaacatttgtatgatatctctaatattactcaaaagattattagcacaatgattttatttgacccaactgatc |
36284136 |
T |
|
| Q |
121 |
tcatcttaacc-nnnnnnnngttaccttggc------------aggggaaacaatcattttgaaatctgaatgcgttgaactctatcattataatggatg |
207 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36284135 |
tcatcttaaccaaaaaaaaaattaccttggcaattaactcataaggggaaacaatcattttgaaatctgaatgcgttgaactctatcattataatggatg |
36284036 |
T |
|
| Q |
208 |
aatgtgttggactctatca-----nnnnnnnngagaggaatgtatctgactgcaaatgcatcat |
266 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36284035 |
aatgtgttggactctatcattttttttcttttgagaggaatgtatctgactgcaaatgcatcat |
36283972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 6436019 - 6436063
Alignment:
| Q |
37 |
atcttaataattaacatttgtatgatatctccaatattactcaaa |
81 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
6436019 |
atcttactaattaacatttgtatgataactcccatattactcaaa |
6436063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 42347213 - 42347261
Alignment:
| Q |
44 |
taattaacatttgtatgatatctccaatattactcaaaagattattagc |
92 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
42347213 |
taattaacatttgtattatatctctgatattactcaaaagtgtattagc |
42347261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University