View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9421_high_2 (Length: 431)

Name: NF9421_high_2
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9421_high_2
NF9421_high_2
[»] chr7 (2 HSPs)
chr7 (6-417)||(47680061-47680475)
chr7 (328-417)||(19278110-19278199)
[»] chr1 (5 HSPs)
chr1 (336-416)||(37201195-37201275)
chr1 (73-148)||(16552484-16552559)
chr1 (336-417)||(19036365-19036446)
chr1 (357-417)||(28040234-28040294)
chr1 (357-401)||(18282197-18282241)
[»] chr6 (3 HSPs)
chr6 (353-410)||(32116578-32116635)
chr6 (365-417)||(29337193-29337245)
chr6 (357-417)||(32120867-32120927)
[»] chr5 (2 HSPs)
chr5 (322-402)||(6821238-6821318)
chr5 (354-417)||(434234-434297)
[»] chr3 (3 HSPs)
chr3 (357-417)||(49018892-49018952)
chr3 (360-403)||(6173005-6173048)
chr3 (360-403)||(6252349-6252392)
[»] chr2 (2 HSPs)
chr2 (322-403)||(8589019-8589100)
chr2 (357-403)||(9684542-9684588)
[»] chr8 (4 HSPs)
chr8 (361-417)||(24125959-24126015)
chr8 (357-417)||(24322563-24322623)
chr8 (353-417)||(25020902-25020966)
chr8 (72-141)||(35206990-35207059)
[»] chr4 (1 HSPs)
chr4 (360-417)||(56461225-56461282)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 417
Target Start/End: Complemental strand, 47680475 - 47680061
Alignment:
Q  6 ataatccttcaagatttatggaatttaaatggatgataaacttttttaaaagttttgatgttgttacatgttcaaggttgaattcgaatccatgatcttt 105  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47680475 ataatccttcaagatttatgggatttaaatggatgataaacttttttaaaagttttgatgttgctacatgttcaaggttgaattcgaatccatgatcttt 47680376  T
Q  106 gttaagttataagagaactatatcatctcatctaagtgttctttgataacttacttcgtctttcattaaaaa-----tattttannnnnnnggaaaatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | ||||        |||||||||    
T  47680375 gttaagttataagagaactatatcatctcatctaagtgttctttgataacttacttcgtctttcattaaaaatgtttttttttttttttttggaaaatct 47680276  T
Q  201 taaagcatctgtttaagaaattaaacacagtaaaactattttggaacttaggtaaacaatctcttaaaagttaaaaactacttctattatgcatgggtat 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||||||    
T  47680275 taaagcatctgtttaagaaattaaacacggtaaaactattttggaacttaggtaaac-atctcttaaaagtttacaactacttctatcatgcatgggtat 47680177  T
Q  301 cgttgaagnnnnnnnngaccaaaggatgtgcaaactgattcatatgcaagatgcgactatgttgtttgatgaagagttgtgtggagcggttgaggacatt 400  Q
    |||| |||        | ||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47680176 cgttaaagtttttttgg-ccaaaggatgtgccaaccgattcatatgcaagatgcgactatgttgtttgataaagagttgtgtggagcggttgaggacatt 47680078  T
Q  401 gtgattggtggatgtcc 417  Q
    |||||||||||||||||    
T  47680077 gtgattggtggatgtcc 47680061  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 417
Target Start/End: Complemental strand, 19278199 - 19278110
Alignment:
Q  328 gtgcaaactgattcatatgcaagatgcgactatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    |||| ||| |||||| ||| | || ||| ||||||||||| || ||||| || ||| | ||||||||||||||||| |||||||| ||||    
T  19278199 gtgccaaccgattcacatggaggaggcggctatgttgtttaataaagagctgcgtgaaacggttgaggacattgtggttggtggaggtcc 19278110  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 336 - 416
Target Start/End: Complemental strand, 37201275 - 37201195
Alignment:
Q  336 tgattcatatgcaagatgcgactatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtc 416  Q
    ||||||| ||| |||| ||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||    
T  37201275 tgattcacatgaaagaggcgactatgatgtttgataaagagttgcgtggagcggttgaggacattgtggttggtggatgtc 37201195  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 16552559 - 16552484
Alignment:
Q  73 atgttcaaggttgaattcgaatccatgatctttgttaagttataagagaactatatcatctcatctaagtgttctt 148  Q
    |||| ||| |||||||| |||||||| |||||  ||||| ||||||||| || | |||||||||||||||||||||    
T  16552559 atgtccaatgttgaatttgaatccataatcttgattaagctataagagatctgtgtcatctcatctaagtgttctt 16552484  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 417
Target Start/End: Complemental strand, 19036446 - 19036365
Alignment:
Q  336 tgattcatatgcaagatgcgactatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    ||||||| ||| | || ||||| ||||||||| || |||||||| ||| ||||||||||||||||||| || ||||| ||||    
T  19036446 tgattcacatggaggaggcgaccatgttgttttataaagagttgcgtgaagcggttgaggacattgtggttagtggaggtcc 19036365  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 28040234 - 28040294
Alignment:
Q  357 ctatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    ||||| |||||||| || ||||| ||| ||||||||||||||||||| |||||||| ||||    
T  28040234 ctatggtgtttgataaaaagttgcgtgaagcggttgaggacattgtggttggtggaggtcc 28040294  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 401
Target Start/End: Complemental strand, 18282241 - 18282197
Alignment:
Q  357 ctatgttgtttgatgaagagttgtgtggagcggttgaggacattg 401  Q
    |||||||||||||| |||||||  ||||||| |||||||||||||    
T  18282241 ctatgttgtttgatcaagagttccgtggagcagttgaggacattg 18282197  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 32116635 - 32116578
Alignment:
Q  353 gcgactatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtg 410  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||    
T  32116635 gcgactatgttgtttgataaagagttgggtggagcggttgaggacattgtggttggtg 32116578  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 29337193 - 29337245
Alignment:
Q  365 tttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    |||||| |||||||| |||||| |||||||||||||||| |||||||| ||||    
T  29337193 tttgataaagagttgcgtggagtggttgaggacattgtggttggtggaggtcc 29337245  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 32120927 - 32120867
Alignment:
Q  357 ctatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    |||||||||||||| ||||| || |||||| | ||||||||| |||| |||||||| ||||    
T  32120927 ctatgttgtttgataaagagctgcgtggagtgattgaggacaatgtggttggtggaagtcc 32120867  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 6821238 - 6821318
Alignment:
Q  322 aaggatgtgcaaactgattcatatgcaagatgcgactatgttgtttgatgaagagttgtgtggagcggttgaggacattgt 402  Q
    |||||||||| |||  ||||| ||| |||| |||||||||||||| ||| ||||||||||||||| ||||||||| |||||    
T  6821238 aaggatgtgccaaccaattcacatggaagaagcgactatgttgttcgataaagagttgtgtggagtggttgaggatattgt 6821318  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 417
Target Start/End: Complemental strand, 434297 - 434234
Alignment:
Q  354 cgactatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    ||||||||||||| ||| |||||||||||||||| |||||||| |||||| || ||||| ||||    
T  434297 cgactatgttgttcgataaagagttgtgtggagcagttgaggatattgtggtttgtggaggtcc 434234  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 49018952 - 49018892
Alignment:
Q  357 ctatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    |||||||||||||| ||||| | ||||||| |||||||||||||||| |||||||||||||    
T  49018952 ctatgttgtttgataaagagctatgtggaggggttgaggacattgtggttggtggatgtcc 49018892  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 6173005 - 6173048
Alignment:
Q  360 tgttgtttgatgaagagttgtgtggagcggttgaggacattgtg 403  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  6173005 tgttgtttgataaagagttgtgtggagcggttgaggatattgtg 6173048  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 6252349 - 6252392
Alignment:
Q  360 tgttgtttgatgaagagttgtgtggagcggttgaggacattgtg 403  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||    
T  6252349 tgttgtttgataaagagttgtgtggagtggttgaggatattgtg 6252392  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 8589100 - 8589019
Alignment:
Q  322 aaggatgtgcaaactgattcatatgcaagatgcgactatgttgtttgatgaagagttgtgtggagcggttgaggacattgtg 403  Q
    |||||||||| |||||||||| ||| | || |||||||||||||||||| |||||||| ||||| ||||  |||| ||||||    
T  8589100 aaggatgtgccaactgattcacatggatgaagcgactatgttgtttgataaagagttgcgtggatcggtcaaggatattgtg 8589019  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 9684542 - 9684588
Alignment:
Q  357 ctatgttgtttgatgaagagttgtgtggagcggttgaggacattgtg 403  Q
    |||||||||||||| ||||| || ||| |||||||||||||||||||    
T  9684542 ctatgttgtttgataaagagctgcgtgaagcggttgaggacattgtg 9684588  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 24126015 - 24125959
Alignment:
Q  361 gttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    |||||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||    
T  24126015 gttgtttgataaagagctgcgtggagcggttgaggacattgtggttggtggaggtcc 24125959  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 24322623 - 24322563
Alignment:
Q  357 ctatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    |||||||||||||| |||||||| |||||| |||| ||||| ||||| |||||||| ||||    
T  24322623 ctatgttgtttgataaagagttgcgtggagaggttaaggactttgtggttggtggaggtcc 24322563  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 25020902 - 25020966
Alignment:
Q  353 gcgactatgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    |||||||||||||||||| ||||| |  ||||||| |||||| |||||||| |||||||| ||||    
T  25020902 gcgactatgttgtttgataaagagctacgtggagcagttgagaacattgtggttggtggaggtcc 25020966  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 35207059 - 35206990
Alignment:
Q  72 catgttcaaggttgaattcgaatccatgatctttgttaagttataagagaactatatcatctcatctaag 141  Q
    ||||| ||||||| |||||||| |||  ||||| ||||||||| |||||| || | ||||||||||||||    
T  35207059 catgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaag 35206990  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 56461225 - 56461282
Alignment:
Q  360 tgttgtttgatgaagagttgtgtggagcggttgaggacattgtgattggtggatgtcc 417  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||| ||| |||| ||||    
T  56461225 tgttgtttgataaagagttgcgtggagcggttgaagacattgtggttgatggaggtcc 56461282  T

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