View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_high_20 (Length: 228)
Name: NF9421_high_20
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_high_20 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 43296285 - 43296506
Alignment:
| Q |
7 |
atttatactccttccccatctccacatcagggaaggaccctgaaaatatcataatatgcttcttcaggcagtgagtcaaggcaccaagctctagttgtcc |
106 |
Q |
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| T |
43296285 |
atttatactccttccccatctccacatcagggaaggaccctgaaaatatcataatatgcttcttcaggcagtgagtcaaggcaccaagctctagttgtcc |
43296384 |
T |
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| Q |
107 |
tccccatattgccgtggactctacttctttgcaataattttcaaacttttgagcaatcgattcatcagaatcaccttcaatcaaattctctgacaaacaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43296385 |
tccccatattgccgtggactctacttctttgcaataattttcaaacttttgagcaatcgattcatcagaatcaccttcaatcaaattctctgacaaacaa |
43296484 |
T |
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| Q |
207 |
aatgggaggaaatctgatgtat |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
43296485 |
aatgggaggaaatctgatgtat |
43296506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 44024725 - 44024504
Alignment:
| Q |
7 |
atttatactccttccccatctccacatcagggaaggaccctgaaaatatcataatatgcttcttcaggcagtgagtcaaggcaccaagctctagttgtcc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44024725 |
atttatactccttccccatctccacatcagggaaggaccctgaaaatatcataatatgcttcttcaggcagtgagtcaaggcaccaagctctagttgtcc |
44024626 |
T |
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| Q |
107 |
tccccatattgccgtggactctacttctttgcaataattttcaaacttttgagcaatcgattcatcagaatcaccttcaatcaaattctctgacaaacaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44024625 |
tccccatattgccgtggactctacttctttgcaataattttcaaacttttgagcaatcgattcatcagaatcaccttcaatcaaattctctgataaacaa |
44024526 |
T |
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| Q |
207 |
aatgggaggaaatctgatgtat |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
44024525 |
aatgggaggaaatctgatgtat |
44024504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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