View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_high_3 (Length: 422)
Name: NF9421_high_3
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 48271075 - 48271490
Alignment:
| Q |
1 |
acatatcctctgtcgaaattgttgctagggctgctgttatcgacgagtcaaatgtggaggcagatattatgagtgaacctcttgctgtagcattgagcat |
100 |
Q |
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| T |
48271075 |
acatatcctctgtcgaaattgttgctagggctgctgttatcgacgagtcaaatgtggagacagatattatgagtgaacctcttgctgtagcattgagcat |
48271174 |
T |
|
| Q |
101 |
tggagacgaaacaggagttagatcagtaccgttgcctactacagttgctcttcatcaactgcctcttaaaaaaggggtgagtggaacagttggtcggagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48271175 |
tggagacgaaacaggagttagatcagtaccgttgcctactacagttgctcttcatcaactgcctcttaaaaaaggggtgagtggaacagttggtcggagt |
48271274 |
T |
|
| Q |
201 |
gtttttgaattggattgtaccccactttgggggcttacatctttatgtggaaagagacctgagatggaagatgcttttgcgattgcacctcggatgttga |
300 |
Q |
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| T |
48271275 |
gtttttgaattggattgtaccccactttgggggtttacatctttatgtggaaagagacctgagatggaagatgctgttgcgattgcacctcggatgttga |
48271374 |
T |
|
| Q |
301 |
aaattcctattcaaatactaaatggtaacagcaaatatgatggaatgaacaaggatggaatgaacaaggattttagtcagcagacaattcatttctttgg |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48271375 |
aaattcctattcaaatgctaaatggtaacagcaaatatgatggaatgaacaaggatggaatgaacaaggattttagtcagcagacaattcatttctttgg |
48271474 |
T |
|
| Q |
401 |
agtctatgatgtccat |
416 |
Q |
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||||||||||| |||| |
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| T |
48271475 |
agtctatgatggccat |
48271490 |
T |
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