View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_low_1 (Length: 537)
Name: NF9421_low_1
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 25 - 525
Target Start/End: Complemental strand, 51863651 - 51863151
Alignment:
| Q |
25 |
gatctaatgttgttggaagtggagggggtaaagataaggcagagatggcagttttgcagcttctgaagaaatcaaacttttttaaaaaataattgaggaa |
124 |
Q |
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| T |
51863651 |
gatctaatgttgttggaagtggagggagtaaagataaggcagagatggcagttttgcagcttctgaagaaatcaaacttttttaaaaaataattgaggaa |
51863552 |
T |
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| Q |
125 |
gaggagaattattattaattaaagcgacactaacggccattctacaatcgtctccgaggggggtatcaactttgtccattgaggttatgaggtcagattc |
224 |
Q |
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| T |
51863551 |
gaggagatttattattaattaaagcgacactaacggccattctacaatcgtctccgaggggggtatcaactttgtccattgaggttatgaggtcagattc |
51863452 |
T |
|
| Q |
225 |
ttagccctgagctgacacctcacggaccgagccaccgaggaaatgaaacttcaaggcaataagcaaaatattacataccagatagtgaagtagtgtaggc |
324 |
Q |
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| T |
51863451 |
ttagccctgagctgacacctcacggaccgagccaccgaggaaatgaaacttcaaggcaataagcaaaatattacataccagatagtgaagtagtgtaggc |
51863352 |
T |
|
| Q |
325 |
cttactcttccttatacaaaaggctcaaaataagtaatgtgtgcacaccattcaactaaatcaatgcaagcaaactatatatatacataacaaaccaagg |
424 |
Q |
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| T |
51863351 |
cttactcttccttatacaaaaggctcaaaataagtaatgtgtgcacaccattcaactaaatcaatgcaagcaaactatatatatacataacaaaccaagg |
51863252 |
T |
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| Q |
425 |
aacctcactttgcaattcaggaataatgaagtatatttggtttgttaaatgccttaacatatacatatgaatgtgagtatgcatgcttacaagtataatc |
524 |
Q |
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| T |
51863251 |
aacctcactttgcaattcagggataatgaagtatatttggtttgttaaatgccttaacatatacatatgaatgtgagtatgcatgcttacaagtataatc |
51863152 |
T |
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| Q |
525 |
t |
525 |
Q |
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| T |
51863151 |
t |
51863151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 401 - 474
Target Start/End: Original strand, 43180501 - 43180574
Alignment:
| Q |
401 |
atatatatacataacaaaccaaggaacctcactttgcaattcaggaataatgaagtatatttggtttgttaaat |
474 |
Q |
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| T |
43180501 |
atatatacacttaacaaaccaaggaacctcactttgcaattcaggggtaatcaagtatatttggttttttaaat |
43180574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 13258370 - 13258418
Alignment:
| Q |
109 |
aaaaataattgaggaagaggagaattattattaattaaagcgacactaa |
157 |
Q |
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| T |
13258370 |
aaaaaaaattggggaagtggaaaattattattaattaaagtgacactaa |
13258418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 48703195 - 48703134
Alignment:
| Q |
115 |
aattgaggaagaggagaattattattaattaaagcgacactaacggccattctacaatcgtc |
176 |
Q |
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| T |
48703195 |
aattgaggaaaagggaaattattattaattaaagtgacactaataaccattttacaatcgtc |
48703134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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