View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9421_low_13 (Length: 414)

Name: NF9421_low_13
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9421_low_13
NF9421_low_13
[»] chr4 (5 HSPs)
chr4 (43-400)||(43217678-43218036)
chr4 (56-127)||(21120126-21120197)
chr4 (56-119)||(53484367-53484430)
chr4 (60-118)||(39237516-39237574)
chr4 (60-127)||(43509192-43509260)
[»] chr8 (8 HSPs)
chr8 (65-127)||(2031327-2031389)
chr8 (61-127)||(26878657-26878723)
chr8 (60-127)||(25198400-25198467)
chr8 (60-115)||(38773276-38773331)
chr8 (60-127)||(43980511-43980578)
chr8 (60-110)||(37600815-37600865)
chr8 (67-124)||(28433870-28433927)
chr8 (61-114)||(34869949-34870002)
[»] chr3 (6 HSPs)
chr3 (61-131)||(31474530-31474599)
chr3 (61-115)||(48214308-48214362)
chr3 (55-84)||(29503176-29503205)
chr3 (60-112)||(11388248-11388300)
chr3 (60-115)||(40645796-40645849)
chr3 (59-131)||(48548186-48548258)
[»] chr5 (5 HSPs)
chr5 (60-123)||(18729707-18729771)
chr5 (60-131)||(19088920-19088990)
chr5 (60-127)||(27642613-27642680)
chr5 (60-115)||(9946283-9946339)
chr5 (87-127)||(10205478-10205518)
[»] scaffold0121 (1 HSPs)
scaffold0121 (60-127)||(24170-24237)
[»] chr7 (5 HSPs)
chr7 (56-99)||(26828385-26828428)
chr7 (60-131)||(21388349-21388420)
chr7 (61-119)||(6376060-6376118)
chr7 (58-132)||(48322884-48322958)
chr7 (56-115)||(41672456-41672516)
[»] chr2 (7 HSPs)
chr2 (61-127)||(1604243-1604308)
chr2 (56-121)||(14287608-14287671)
chr2 (60-101)||(26512221-26512262)
chr2 (60-127)||(7255712-7255779)
chr2 (60-127)||(28733934-28734001)
chr2 (60-131)||(45214832-45214903)
chr2 (63-131)||(4758133-4758201)
[»] chr6 (3 HSPs)
chr6 (60-115)||(3887870-3887925)
chr6 (60-127)||(19839042-19839109)
chr6 (60-101)||(9461430-9461471)
[»] chr1 (2 HSPs)
chr1 (60-131)||(13145524-13145595)
chr1 (61-115)||(44652788-44652842)
[»] scaffold0013 (1 HSPs)
scaffold0013 (60-122)||(49253-49314)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 43 - 400
Target Start/End: Complemental strand, 43218036 - 43217678
Alignment:
Q  43 aatataaagtctctatacaaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaaatatactgtta 142  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  43218036 aatataaagtctctatgcaaattaatagatgtatttattattcattttctaaacataccacttattaatactattaatttatcttaaaaatatattgtta 43217937  T
Q  143 ttagcttcttcaacaacaaaaatacgcagttatcattagttaaaggaagacttggnnnnnnngtgaatgtcacgttggaaaaacaatcatgattcttttg 242  Q
    ||| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  43217936 ttaacttcttcaacaa-aaaaatacgtagttatcattagtcaaaggaagacttggaaaaaaagtgaatgtcacgttggaaaaacaatcatgattcttttg 43217838  T
Q  243 gaacgaaatattgatggtgttgttcatcgg--nnnnnnngtgaacgccaacgaacctcatcagacaaggaatcatatttttctctggtgtgtcgcttcta 340  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  43217837 gaacgaaatattgatggtgttgttcatcggacaaaaaaagtgaacgccaacgaacctcatcagacaaagaatcatatttttctcttgtgtgtcgcttcta 43217738  T
Q  341 aatccttgttgacgaacgatgagaggttggtgtggtctaatccaatctagtgtttgtcct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43217737 aatccttgttgacgaacgatgagaggttggtgtggtctaatccaacctagtgtttgtcct 43217678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 21120126 - 21120197
Alignment:
Q  56 tatacaaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||||||||  |||||||||| |||| || ||||| ||| ||||| ||||||||||||| |||||| ||||    
T  21120126 tatacaaatttctagatgtattgattactctttttccaaatataccccttattaatactaataatttgtctt 21120197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 53484367 - 53484430
Alignment:
Q  56 tatacaaattattagatgtatttattattcattttctaaacataccgcttattaatactattaa 119  Q
    |||||||||||  || |||||||||||||  ||||||||||| ||| || ||||||||||||||    
T  53484367 tatacaaattaccaggtgtatttattattttttttctaaacaaacccctaattaatactattaa 53484430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 39237516 - 39237574
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactatta 118  Q
    ||||||| |||||||||||||||||  ||| ||||||||||| || ||||||| |||||    
T  39237516 caaattactagatgtatttattatttttttcctaaacatacccctaattaataatatta 39237574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 43509260 - 43509192
Alignment:
Q  60 caaattattagatgtatttattattcattttc-taaacataccgcttattaatactattaatttatctt 127  Q
    |||||||||||||| ||||||||||  ||||| |||| ||||| || |||||||||| |||||| ||||    
T  43509260 caaattattagatgcatttattattttttttcttaaagatacccctaattaatactactaatttgtctt 43509192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 2031389 - 2031327
Alignment:
Q  65 tattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||||||||||||||||||| |||  |||||||||| || |||||||||| |||||||||||    
T  2031389 tattagatgtatttattattcttttcttaaacatacctctaattaatactactaatttatctt 2031327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 26878657 - 26878723
Alignment:
Q  61 aaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    |||||| |||||||||||||||||  ||| ||||||||||| || |||||||||| ||| |||||||    
T  26878657 aaattactagatgtatttattatttttttcctaaacatacccctaattaatactactaacttatctt 26878723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 25198467 - 25198400
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||||| |||||| ||||||||||  ||| ||||||||||| || |||||||||| ||| |||||||    
T  25198467 caaattactagatgcatttattattattttcctaaacatacccctaattaatactactaacttatctt 25198400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 38773276 - 38773331
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatacta 115  Q
    |||||||||||||| ||||||||||  ||| ||||||||||| || ||||||||||    
T  38773276 caaattattagatgcatttattatttttttcctaaacatacctctaattaatacta 38773331  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 43980511 - 43980578
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||||| |||||| ||||||||||  ||| ||||||||||| || |||||| ||| |||||||||||    
T  43980511 caaattactagatgcatttattattattttcctaaacatacccctaattaatcctactaatttatctt 43980578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 37600815 - 37600865
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaa 110  Q
    |||||||||||||| ||||||||||  ||||||||||||||| || |||||    
T  37600815 caaattattagatgcatttattattttttttctaaacatacccctaattaa 37600865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 28433927 - 28433870
Alignment:
Q  67 ttagatgtatttattattcattttctaaacataccgcttattaatactattaatttat 124  Q
    ||||||| ||||||||||| |||| |||| | ||| |||||||||||||| |||||||    
T  28433927 ttagatgcatttattattctttttttaaatacaccacttattaatactatcaatttat 28433870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 34870002 - 34869949
Alignment:
Q  61 aaattattagatgtatttattattcattttctaaacataccgcttattaatact 114  Q
    ||||||||||||| ||||||||||  |||||||||||||||  | |||||||||    
T  34870002 aaattattagatgcatttattattttttttctaaacatacccttaattaatact 34869949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 31474599 - 31474530
Alignment:
Q  61 aaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 131  Q
    ||||||||||||||||||||||||  ||| ||||||||||| || |||||||||| |||||| ||||||||    
T  31474599 aaattattagatgtatttattattt-tttcctaaacatacccctaattaatactactaatttgtcttaaaa 31474530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 48214362 - 48214308
Alignment:
Q  61 aaattattagatgtatttattattcattttctaaacataccgcttattaatacta 115  Q
    ||||||||||||||||||||||||  ||| ||||||||||  || ||||||||||    
T  48214362 aaattattagatgtatttattatttttttcctaaacatactcctaattaatacta 48214308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 84
Target Start/End: Original strand, 29503176 - 29503205
Alignment:
Q  55 ctatacaaattattagatgtatttattatt 84  Q
    ||||||||||||||||||||||||||||||    
T  29503176 ctatacaaattattagatgtatttattatt 29503205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 11388300 - 11388248
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaata 112  Q
    ||||||| |||||| ||||||||||  ||||||||||||||| || |||||||    
T  11388300 caaattactagatgcatttattattttttttctaaacatacccctaattaata 11388248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 40645849 - 40645796
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatacta 115  Q
    |||||||||||||| ||||||||||  ||| ||||||||||| || ||||||||||    
T  40645849 caaattattagatgcatttattatt--tttcctaaacatacccctaattaatacta 40645796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 48548258 - 48548186
Alignment:
Q  59 acaaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 131  Q
    ||||||| ||||||||||||||||||||||||  ||| ||| |  ||||||||  ||| ||||| ||||||||    
T  48548258 acaaatttttagatgtatttattattcatttttcaaatatatcttttattaatgttatcaatttgtcttaaaa 48548186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 18729771 - 18729707
Alignment:
Q  60 caaattattagatgtatttattattcattttc-taaacataccgcttattaatactattaattta 123  Q
    |||||||||||||| ||||||||||  ||||| |||||||||| || ||||||||||||||||||    
T  18729771 caaattattagatgcatttattattatttttcctaaacatacccctaattaatactattaattta 18729707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 19088920 - 19088990
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 131  Q
    |||||||||| | ||| ||||||||  ||||||||||| ||| || ||||||||||||||||||| ||||||    
T  19088920 caaattattaaaagtaattattattt-ttttctaaacaaacccctgattaatactattaatttattttaaaa 19088990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 27642680 - 27642613
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||||| |||||| ||||||||||  |||||||||||||||  | |||||| ||| |||||||||||    
T  27642680 caaattactagatgcatttattattatttttctaaacatacccttaattaatcctactaatttatctt 27642613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 9946283 - 9946339
Alignment:
Q  60 caaattattagatgtatttattattcatttt-ctaaacataccgcttattaatacta 115  Q
    |||||||||||||| ||||||||||  |||| ||||||||||| || ||||||||||    
T  9946283 caaattattagatgcatttattattttttttcctaaacatacccctaattaatacta 9946339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 10205518 - 10205478
Alignment:
Q  87 ttttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||| ||||||||| ||||||||||||| |||||||||||    
T  10205518 ttttccaaacataccccttattaatactactaatttatctt 10205478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 24237 - 24170
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||||| |||||| ||||| ||||  ||||||||||||||| || |||||||||||||| |||||||    
T  24237 caaattactagatgcatttactattttttttctaaacatacccctaattaatactattaacttatctt 24170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 26828385 - 26828428
Alignment:
Q  56 tatacaaattattagatgtatttattattcattttctaaacata 99  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  26828385 tatacaaattattagatgtatttattattcttttcctaaacata 26828428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 21388420 - 21388349
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 131  Q
    ||||||| |||||| ||||||||||  ||| |||||||||||  | |||||||||| ||| |||||||||||    
T  21388420 caaattactagatgcatttattatttttttcctaaacataccattaattaatactactaacttatcttaaaa 21388349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 6376060 - 6376118
Alignment:
Q  61 aaattattagatgtatttattattcattttctaaacataccgcttattaatactattaa 119  Q
    ||||||||||||||||||||||||  ||| ||||||||||  || ||||||| ||||||    
T  6376060 aaattattagatgtatttattatttttttcctaaacatactcctaattaataatattaa 6376118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 48322884 - 48322958
Alignment:
Q  58 tacaaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaaa 132  Q
    |||||||| |||||||| |||| || || |||| |||| ||||  ||||||||| |||| |||||||||||||||    
T  48322884 tacaaatttttagatgtctttactactctttttttaaatatactccttattaatgctatcaatttatcttaaaaa 48322958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 41672456 - 41672516
Alignment:
Q  56 tatacaaattattagatgtatttattattcatttt-ctaaacataccgcttattaatacta 115  Q
    ||||||||||| |||||| ||||||||||  |||| ||||||||||| || ||||||||||    
T  41672456 tatacaaattactagatgcatttattattttttttcctaaacatacccctaattaatacta 41672516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 1604243 - 1604308
Alignment:
Q  61 aaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||| | ||| |||||| ||||    
T  1604243 aaattattagatgtatttattatt-attttctaaacatacctctaattattcctactaatttgtctt 1604308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 14287671 - 14287608
Alignment:
Q  56 tatacaaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatt 121  Q
    |||||||||||||||||||| ||||| ||  ||||||||||||||| || ||||||| ||||||||    
T  14287671 tatacaaattattagatgtaattattttt--ttttctaaacatacccctaattaatattattaatt 14287608  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 26512262 - 26512221
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacatacc 101  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  26512262 caaattattagatgtatttattattatttttctaaacatacc 26512221  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 7255779 - 7255712
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||||| |||||||||||||||||  ||| ||||||||| | || |||||||||| |||||| ||||    
T  7255779 caaattactagatgtatttattattattttcctaaacatatccctaattaatactactaatttgtctt 7255712  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 28734001 - 28733934
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||||| || ||| ||||||||||  ||| ||||||||||| || |||||||||| |||||||||||    
T  28734001 caaattactatatgcatttattattgttttcctaaacatacccctaattaatactactaatttatctt 28733934  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 45214903 - 45214832
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 131  Q
    ||||||| |||||  ||||||||||  |||  |||||||||| || |||||||||| |||||||||||||||    
T  45214903 caaattactagatacatttattatttttttcttaaacatacccctaattaatactactaatttatcttaaaa 45214832  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 4758201 - 4758133
Alignment:
Q  63 attattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 131  Q
    ||||||||||| ||||||||||  ||| |||||||||   || |||||||||| |||||| ||||||||    
T  4758201 attattagatgcatttattatttttttcctaaacatattcctaattaatactactaatttttcttaaaa 4758133  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 3887870 - 3887925
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatacta 115  Q
    |||||||||||||| ||||||||||  ||| ||||||||||| || ||||||||||    
T  3887870 caaattattagatgcatttattatttttttcctaaacatacccctaattaatacta 3887925  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 19839109 - 19839042
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatctt 127  Q
    ||||||| |||||| ||||||||||  ||| ||||||||||| || |||||| ||| |||||||||||    
T  19839109 caaattactagatgcatttattattattttcctaaacatacccctaattaatcctactaatttatctt 19839042  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 9461471 - 9461430
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacatacc 101  Q
    |||||||||||||| ||||||||||  |||||||||||||||    
T  9461471 caaattattagatgcatttattattttttttctaaacatacc 9461430  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 13145595 - 13145524
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaatttatcttaaaa 131  Q
    ||||||| |||||||||| ||||||  ||| ||||||||||| || ||||||| || ||| |||||||||||    
T  13145595 caaattactagatgtattaattatttttttcctaaacatacccctaattaatattactaacttatcttaaaa 13145524  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 44652788 - 44652842
Alignment:
Q  61 aaattattagatgtatttattattcattttctaaacataccgcttattaatacta 115  Q
    ||||||||||||| ||||||||||  ||| ||||||||||| || ||||||||||    
T  44652788 aaattattagatgcatttattatttttttcctaaacatacccctaattaatacta 44652842  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 49314 - 49253
Alignment:
Q  60 caaattattagatgtatttattattcattttctaaacataccgcttattaatactattaattt 122  Q
    ||||||| |||||||||||||||||  ||| ||||||||||| || |||||||||| ||||||    
T  49314 caaattactagatgtatttattatt-ttttcctaaacatacccctaattaatactactaattt 49253  T

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