View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_low_14 (Length: 369)
Name: NF9421_low_14
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 42196724 - 42196389
Alignment:
| Q |
19 |
cttgtgtccatgaatctagataattcggtttggcttcttttcaagatatcaatattgcatactttgggttgtatttttgtccttttaagaatattctttt |
118 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
42196724 |
cttgtgtccatgaatatagataatttggtttggcttcttttcaagatatcaatattgcatcctttgggttgtatttttgtccttttaggaatattctttt |
42196625 |
T |
|
| Q |
119 |
actgtgaatatttggattttggaagaaatattctttcagcatgaatatttaaattcaagtgtatgtaattttgtgagctatannnnnnncttttggatat |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42196624 |
actgtgaatatttggattttggaagaaatattctttcagtatgaatatttaaattcaagtgtatgtaattttgtgagctatattttttctttttggatat |
42196525 |
T |
|
| Q |
219 |
gaatttggtttgctgcagctttcgaaagcaagatacattgatgaaattgaattcacatacttgaaattttagaagtaagtattttgcatatttcaaattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42196524 |
gaatttggtttgctgcagctttcgaaagcaagatacattgatgaaattgaattcacatacttgaaattttagaagtaagtattttgcatatttcaaattt |
42196425 |
T |
|
| Q |
319 |
gtgaaatcaattgtgtctgctcttgactttatttgc |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42196424 |
gtgaaatcaattgtgtctgctcttgactttatttgc |
42196389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 13456697 - 13457032
Alignment:
| Q |
19 |
cttgtgtccatgaatctagataattcggtttggcttcttttcaagatatcaatattgcatactttgggttgtatttttgtccttttaagaatattctttt |
118 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
13456697 |
cttgtgtccatgaatatagataatttggtttggcttcttttcaagatatcaatattgcatcctttgggttgtatttttgtccttttaggaatattctttt |
13456796 |
T |
|
| Q |
119 |
actgtgaatatttggattttggaagaaatattctttcagcatgaatatttaaattcaagtgtatgtaattttgtgagctatannnnnnncttttggatat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13456797 |
actgtgaatatttggattttggaagaaatattctttcagtatgaatatttaaattcaagtgtatgtaattttgtgagctatattttttctttttggatat |
13456896 |
T |
|
| Q |
219 |
gaatttggtttgctgcagctttcgaaagcaagatacattgatgaaattgaattcacatacttgaaattttagaagtaagtattttgcatatttcaaattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13456897 |
gaatttggtttgctgcagctttcgaaagcaagatacattgatgaaattgaattcacatacttgaaattttagaagtaagtattttgcatatttcaaattt |
13456996 |
T |
|
| Q |
319 |
gtgaaatcaattgtgtctgctcttgactttatttgc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
13456997 |
gtgaaatcaattgtgtctgctcttgactttatttgc |
13457032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 21789180 - 21788839
Alignment:
| Q |
19 |
cttgtgtccatgaatctagataattcggtttggcttcttttcaagatatcaatattgcatactttgggttgtatttttgtccttttaagaatattctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| |
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| T |
21789180 |
cttgtgtccatgaatctagataattcggtttggcttcttttcaagatatcaatattgcatcctttgggttgtatttttgttcttttaggaatattctttt |
21789081 |
T |
|
| Q |
119 |
actgtgaatatttggattttggaagaaatattctttcagcatgaatatttaaattcaagtgtatgtaattttgtgagctata-nnnnnnncttttggata |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
21789080 |
acggtgaatatttggattttggaagaaatattctttcagcatgaatatttaaattcaagtgtatgtaatattgtgagctatattttttttcttttggata |
21788981 |
T |
|
| Q |
218 |
tgaatttggtttgctgcagctttcgaaagcaagatacattgatgaaattgaat-----tcacatacttgaaattttagaagtaagtattttgcatatttc |
312 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21788980 |
tgaatttggttttctgcagctttcgaaagcaagatacattgatgaaattgaattcacatcacatacttgaaattttagaagtaagtattttgcatatttc |
21788881 |
T |
|
| Q |
313 |
aaatttgtgaaatcaattgtgtctgctcttgactttatttgc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
21788880 |
aaatttgtgaaatcaattgtgtctgctcttgactttatttgc |
21788839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 213 - 354
Target Start/End: Complemental strand, 38149149 - 38149004
Alignment:
| Q |
213 |
ggatatgaatttggtttgctgcagctttcgaaagcaagatacattgatgaa----attgaattcacatacttgaaattttagaagtaagtattttgcata |
308 |
Q |
| |
|
|||||||| ||||||||||||||| || | |||||| |||||||| || || |||||| ||||||||||||| ||||||||||| | |||||||||| |
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| T |
38149149 |
ggatatgattttggtttgctgcagtttccaaaagcaggatacattcattaatgcaattgaaatcacatacttgaagttttagaagtatgcattttgcata |
38149050 |
T |
|
| Q |
309 |
tttcaaatttgtgaaatcaattgtgtctgctcttgactttatttgc |
354 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
38149049 |
tttcaaatttgtgaaatcaattgtgtatgcttttgaatttatttgc |
38149004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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