View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_low_20 (Length: 339)
Name: NF9421_low_20
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 326
Target Start/End: Complemental strand, 37304786 - 37304468
Alignment:
| Q |
9 |
agcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtatttcatttaattaatttggaggnnnnnn |
108 |
Q |
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| T |
37304786 |
agcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtatttcatttaattaatttggaggattttt |
37304687 |
T |
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| Q |
109 |
nnnnnnnnnnnnnnnnggttgaaaaatgaagagtacttagaatgatttatannnnnnnnnnn-gtttgcagactcaacaggagaggcatgagaatacttc |
207 |
Q |
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| T |
37304686 |
tatttattttatttttggttgaaaaatgaagagtacttagaatgatttatattttttttttttgtttgcagactcaacaggagaggcatgagaatacttc |
37304587 |
T |
|
| Q |
208 |
acttagaactgaaaatgagaaacttcgcgctgataacatgaggtttagagaagctctaagtaatgcttcttgtcctaattgtggtggaccaactgctatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37304586 |
acttagaactgaaaatgagaaacttcgcgctgataacatgaggtttagagaagctctaagtaatgcttcttgtcctaattgtggtggaccaactgctatc |
37304487 |
T |
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| Q |
308 |
ggagaaatgtcgtttgatg |
326 |
Q |
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| T |
37304486 |
ggagaaatgtcgtttgatg |
37304468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 16825423 - 16825513
Alignment:
| Q |
236 |
gctgataacatgaggtttagagaagctctaagtaatgcttcttgtcctaattgtggtggaccaactgctatcggagaaatgtcgtttgatg |
326 |
Q |
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| T |
16825423 |
gctgataacatgaggtatagagaagctcttagcaatgcttcatgtcctaattgtggtggtccaacagctataggtgaaatgtcatttgatg |
16825513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 16825200 - 16825272
Alignment:
| Q |
9 |
agcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtat |
81 |
Q |
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||||||||||||||| | ||||| |||||||| |||||||||||||| |||||| | |||||||||||||||| |
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| T |
16825200 |
agcagagagttagggcttgagcctttgcaagtcaagttttggtttcaaaacaaaaggactcaaatgaaggtat |
16825272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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