View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9421_low_25 (Length: 314)

Name: NF9421_low_25
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9421_low_25
NF9421_low_25
[»] chr1 (1 HSPs)
chr1 (1-294)||(12876262-12876551)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 12876262 - 12876551
Alignment:
Q  1 tggtgttaagttgtgcttgttatgtgtaatttcttgtaaggaaaaagacgaatagtgtgttgctttacattttcacatatatacaagggttgttaattta 100  Q
    |||||| |||||||||||||||||||  | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12876262 tggtgtgaagttgtgcttgttatgtgcgacttcttgtaaggagaaagacgaatagtgtgttgctttacattttcacatatatacaagggttgttaattta 12876361  T
Q  101 catttatatccgagtcattcactttttatatctatataccatgttcaacatgagtttaacatgagtgtcactttttactttagaaaccgattttataatg 200  Q
    |||||||||||||  ||| |||| |||||||||||||       | |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12876362 catttatatccgaaccatccactatttatatctatat-------tgaacacgagtttaacatgagtgtcactttttactttagaaaccgattttataatg 12876454  T
Q  201 ttgagttagtttcaac---ccaaattcaaacatacttcatcttccaagtatcatgtcttttcaacaacacaccagcgttcactatggccgtggaagt 294  Q
    ||||||||||||||||   |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12876455 ttgagttagtttcaacccgccaaattcaaacatccttcatcttctaagcatcatgtcttttcaacaacacaccagcgttcactatggccgtggaagt 12876551  T

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