View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_low_28 (Length: 294)
Name: NF9421_low_28
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 1840219 - 1840502
Alignment:
| Q |
1 |
gttacggttattttaatagttacgatgatgaaaacgagcattcaacaacagggtgcttagcaagcgttattggtcatgaaagattgattaataatggaac |
100 |
Q |
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| T |
1840219 |
gttacggttattttaatagttacgatggtgaaaacgagcattcaacaacagggtgcttaacaagcgttattggtcatgaaagattgattaataatggaac |
1840318 |
T |
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| Q |
101 |
atgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaacaaaaactcatccgatttttgt |
200 |
Q |
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| T |
1840319 |
atgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaacaaaaactcatccgatttttgt |
1840418 |
T |
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| Q |
201 |
agctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtttacctttcaaccgatcacct |
284 |
Q |
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| T |
1840419 |
agctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtttacctttcaaccgatcacct |
1840502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 94 - 270
Target Start/End: Complemental strand, 1832697 - 1832524
Alignment:
| Q |
94 |
atggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaacaaaaactcatccga |
193 |
Q |
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| T |
1832697 |
atggaaaatgttcgggtgtagggtgttgccaaattgatattcatcctaaaatgaggaatgtaagcatacaagcttctaatttcaacact---tcatccaa |
1832601 |
T |
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| Q |
194 |
tttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcacaaggtttacctt |
270 |
Q |
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| T |
1832600 |
attttgtagctattcatttgttgttaggaatggtagctatgatttttcatccactcatttatcacaaggtttacctt |
1832524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 1866231 - 1866409
Alignment:
| Q |
80 |
aagattgattaataatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatttcaac |
179 |
Q |
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| T |
1866231 |
aagattgattgataatgaaacatgttcgggtatagggtgctgccaagttgatattcctcctaaaatgtggaatataagcatagaagcttataatttcaac |
1866330 |
T |
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| Q |
180 |
aaaaactcatccgatttttgtagctatgcatttgttgctaagaatggtagctatagtttttcatccactcatttatcac |
258 |
Q |
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| T |
1866331 |
caaaattcatcactatattgtagctatgcatttgttgtcaagaatggtagctatactttttctaccaatcatttatcac |
1866409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 9164155 - 9164081
Alignment:
| Q |
93 |
aatggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagct |
167 |
Q |
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| T |
9164155 |
aatggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtgtacaagct |
9164081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 9158037 - 9157966
Alignment:
| Q |
96 |
ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagct |
167 |
Q |
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| T |
9158037 |
ggaacatgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataagtatagaagct |
9157966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 9175990 - 9175916
Alignment:
| Q |
100 |
catgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt |
174 |
Q |
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| T |
9175990 |
catgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaagcttctaatt |
9175916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 9203019 - 9202945
Alignment:
| Q |
100 |
catgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaagctactaatt |
174 |
Q |
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| T |
9203019 |
catgttcgggtattggttgttgtcaagttgatattccacctatgatgaggaatataactatacaatcttctaatt |
9202945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 9220487 - 9220418
Alignment:
| Q |
96 |
ggaacatgttcgggtatagggtgttgccaagttgatattcctcctagaatgagatatataagtatacaag |
165 |
Q |
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| T |
9220487 |
ggaacatgttcgggtattggttgttgtcaagttgatattccacatatgatgaggaatataagtgtacaag |
9220418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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