View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_low_36 (Length: 270)
Name: NF9421_low_36
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 83 - 260
Target Start/End: Original strand, 45953171 - 45953347
Alignment:
| Q |
83 |
ggaaaatgatttatagcacgacaactcttctcgtgccatttccacgattcctaaattcatgtttaatttctctctttctgaaaagtccaatctaagccat |
182 |
Q |
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| T |
45953171 |
ggaaaatgatttatagcacgacaactcttctcgtgccatttgcacgattcttaaattcatgtttaatttctctctttctgaaa-gtccaatctcagccat |
45953269 |
T |
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| Q |
183 |
atctctctttctatttctccatttaatttaaatgataatttagtcctcatcacttcaacatcaagtttttgacctttg |
260 |
Q |
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| T |
45953270 |
atatctctttctatttctccatttaatttaaatgataatttagtcctcatcacttcaacatcaagtttttgacttttg |
45953347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 83 - 255
Target Start/End: Complemental strand, 36676333 - 36676162
Alignment:
| Q |
83 |
ggaaaatgatttatagcacgacaactcttctcgtgccatttccacgattcctaaattcatgtttaatttctctctttctgaaaagtccaatctaagccat |
182 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |
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| T |
36676333 |
ggaaaatgatttatagcacgacaattcttctcgtgccatttgcacgattcctaaattcatgtttaatttctctttttctgaaa-gtccaatctcagccat |
36676235 |
T |
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| Q |
183 |
atctctctttctatttctccatttaatttaaatgataatttagtcctcatcacttcaacatcaagtttttgac |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676234 |
atctctctttctatttctccatttaatttaaatgataatttagtcctcatcacttcaacatcaagtttttgac |
36676162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15127581 - 15127499
Alignment:
| Q |
1 |
ttgatatattttgtcactatatttatcaattcccatatttgttttattaaacattaaaatccttaagt-tatatatgtttttt |
82 |
Q |
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|||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
15127581 |
ttgatacatcttgtcactatatttatcaatttccatatttgttttattaaacattaaagtccttaagtatatatatgtttttt |
15127499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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