View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9421_low_4 (Length: 491)
Name: NF9421_low_4
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 209 - 470
Target Start/End: Original strand, 44646755 - 44647016
Alignment:
| Q |
209 |
tgataaagttaaagtaaattgaagttgtgaatgtaactaatttaagggttccaagtcaagtatcaattgcacacacatatcaaatgagtacgtttttcac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44646755 |
tgataaagttaaagtaaattgaagttgtgaatgtaactaatttaagggttccaagtcaagtatcatttgcacacacatatcaaatgagtacgtttttcac |
44646854 |
T |
|
| Q |
309 |
aaaccgattttcacctccacagcataatagagtgaagaagaaaaatggcttattattatagaaacctaataaagataatgtctaacatgcttacatctat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44646855 |
aaaccgattttcacctccacagcataatagagtgaagaagaaaaatggcttattattatggaaacctaataaagataatgtctaacatgcttacatctat |
44646954 |
T |
|
| Q |
409 |
aatgaagtcataaatccttctttgtcgtcttgctacttttaccatatctatatgtgaggaat |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44646955 |
aatgaagtcataaatccttctttgtcgtcttgctacttttaccatatctatatgtgaggaat |
44647016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 44646575 - 44646753
Alignment:
| Q |
1 |
ccaagttcaataaaagatgaaaaatgtgggaaccatattgccttgtttatattaagatcaatattgctacatcaacaacgtggtctagggatgtcatagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44646575 |
ccaagttcaataaaagatgaaaaatgtgggaaccatattgccttgtttatattaagatcaatattgctacatcaacaacgtggtctaggcatgtcatagt |
44646674 |
T |
|
| Q |
101 |
cattgaaattatatatatctttgatttttcatataatagaagtttatgacataaaggtttttcatttttcatacacata |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44646675 |
cattgaaattatatatatctttgatttttcatataatagaagtttatgacataaaggtttttcatttttcatacacata |
44646753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University