View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_low_40 (Length: 247)
Name: NF9421_low_40
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_40 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 44024262 - 44024505
Alignment:
| Q |
4 |
agaagcagagagagaacagagaatccaagcagagcagaatgacattataagtgatcgcacagttgaaaatgagaaacttgaaaggaagttgaagcctctt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44024262 |
agaagcagagagagaacagagaatccaagcagagcagaatgacaatataagtgatcgcacagttgaaaatgagaaactcgaaaggaagttgaagcctctt |
44024361 |
T |
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| Q |
104 |
ggtttgactgtatgtgaaataaagcctgatgggcactgcctttacagagctgttgagaatcagttggcccacctctttgggggaaaatctccatatacat |
203 |
Q |
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| T |
44024362 |
ggtttgactgtatgtgaaataaagcctgatgggcactgcctttacagagctgttgagaatcagttggcccacctctttgggggaaaatctccatatacat |
44024461 |
T |
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| Q |
204 |
tccaacaacttcgagaaatggcagctgcttacatgaggaagcat |
247 |
Q |
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| T |
44024462 |
tccaacaacttcgagaaatggcagctgcttacatgaggaagcat |
44024505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 43296748 - 43296505
Alignment:
| Q |
4 |
agaagcagagagagaacagagaatccaagcagagcagaatgacattataagtgatcgcacagttgaaaatgagaaacttgaaaggaagttgaagcctctt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43296748 |
agaagcagagagagaacagagaatccaagcagagcagaatgacattataagtgatcgcacagttgaaaatgagaaactcgaaaggaagttgaagcctctt |
43296649 |
T |
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| Q |
104 |
ggtttgactgtatgtgaaataaagcctgatgggcactgcctttacagagctgttgagaatcagttggcccacctctttgggggaaaatctccatatacat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43296648 |
ggtttgactgtatgtgaaataaagcctgatgggcactgcctttacagagctgttgagaatcatttggcccacctctttgggggaaaatctccatatacat |
43296549 |
T |
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| Q |
204 |
tccaacaacttcgagaaatggcagctgcttacatgaggaagcat |
247 |
Q |
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| T |
43296548 |
tccaacaacttcgagaaatggcagctgcttacatgaggaagcat |
43296505 |
T |
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