View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_low_42 (Length: 246)
Name: NF9421_low_42
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 46531225 - 46531424
Alignment:
| Q |
35 |
acatcaccaaacatttggtatcaaaaacagaattcaagaagaagaatgtcgtgctttcaccgttgtcactccaaactgtgctcagcatagtagctgccgg |
134 |
Q |
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| T |
46531225 |
acatcaccaaacatttggtatcaaaaacagaattcaagaagaagaatgtcgtgctttcaccgttgtcactccaaactgtgctcagcatagtagctgccgg |
46531324 |
T |
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| Q |
135 |
ttccgagggtccgacacaatgtcagcttctctccttccttggatcaaaatccattgatcatctcaactccttatccactcacctctttacctctgtgctt |
234 |
Q |
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| T |
46531325 |
ttccgagggtccgacgcaatgtcagcttctctccttccttggttcaaaatccattgatcatctcaactccttatccactcacctctttacctctgtgctt |
46531424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 46554929 - 46554807
Alignment:
| Q |
97 |
ttgtcactccaaactgtgctcagcatagtagctgccggttccgagggtccgacacaatgtcagcttctctccttccttggatcaaaatccattgatcatc |
196 |
Q |
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| T |
46554929 |
ttgtcactccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcggatcagaatccatccaccatc |
46554830 |
T |
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| Q |
197 |
tcaactccttatccactcacctc |
219 |
Q |
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| T |
46554829 |
ttaactccttgtcctctcacctc |
46554807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 47415001 - 47414953
Alignment:
| Q |
158 |
agcttctctccttccttggatcaaaatccattgatcatctcaactcctt |
206 |
Q |
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| T |
47415001 |
agcttctcgacttcctcggctcaaaatccattgatcatctcaactcctt |
47414953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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