View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_low_51 (Length: 224)
Name: NF9421_low_51
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 2976522 - 2976321
Alignment:
| Q |
13 |
acagatacagatacagacatgcacactcaatcaacataagtacaaaacgaaatttccattgtaagtaacaaaaacaagagagagaaaacttacttgaaca |
112 |
Q |
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| T |
2976522 |
acagatacagatacagacatgcacactcaatcaacaaaagtacaaaacgaaatttccattgtaagtaacaaaaacaagagagagaaaacttacttgagca |
2976423 |
T |
|
| Q |
113 |
agatgatgaacgaaattgagaggaagagaagatgggggtgtaagagtaattaatagaagaaga------agaatggtgatgagggaatttatgagggtga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
2976422 |
agatgatgaacgaaattgagaggaagagaagatgggggtgtaagagtaattaatagaagaagaagaagaagaatggtgatgaggaaatttatgagggtga |
2976323 |
T |
|
| Q |
207 |
tg |
208 |
Q |
| |
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|| |
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| T |
2976322 |
tg |
2976321 |
T |
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