View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9421_low_56 (Length: 209)
Name: NF9421_low_56
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9421_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 31563941 - 31563763
Alignment:
| Q |
12 |
agcagagacggcagtattaccaaaaggtgtgaacgaaggtggctcatggggaagaggattcatcctgcctggaggaggtcttaaaggtggcattccagaa |
111 |
Q |
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| T |
31563941 |
agcagagacggcagtattaccaaaaggtgtgaacgaaggtggctcatggggaagaggattcatcctgcctggaggaggtcttaaaggtggcattccagaa |
31563842 |
T |
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| Q |
112 |
tggatagttcccactctcccaggaggaggattcaattcaaatggcgatccgacagcagcaaaagctcccatcgattgat |
190 |
Q |
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| T |
31563841 |
tggatagttcccactctcccaggaggaggattcaattcaaatggcgatccgacaacagcaaaagctcccatcgattgat |
31563763 |
T |
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