View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9421_low_58 (Length: 206)

Name: NF9421_low_58
Description: NF9421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9421_low_58
NF9421_low_58
[»] chr5 (14 HSPs)
chr5 (36-193)||(38177964-38178117)
chr5 (36-193)||(38205188-38205341)
chr5 (30-193)||(18728467-18728626)
chr5 (30-193)||(32087614-32087773)
chr5 (43-165)||(32838378-32838500)
chr5 (30-193)||(33256500-33256659)
chr5 (77-193)||(38597045-38597157)
chr5 (55-193)||(35395433-35395565)
chr5 (39-164)||(35292256-35292381)
chr5 (39-189)||(43317934-43318080)
chr5 (71-134)||(17574472-17574535)
chr5 (80-148)||(24496884-24496952)
chr5 (71-133)||(7267998-7268060)
chr5 (71-147)||(18624914-18624990)
[»] chr8 (19 HSPs)
chr8 (39-193)||(42897648-42897798)
chr8 (30-193)||(8654599-8654758)
chr8 (41-142)||(1320764-1320865)
chr8 (40-193)||(37525898-37526047)
chr8 (25-148)||(32822501-32822624)
chr8 (25-193)||(33750244-33750408)
chr8 (36-165)||(33160019-33160148)
chr8 (23-165)||(38882655-38882797)
chr8 (30-165)||(462237-462370)
chr8 (39-163)||(31201017-31201141)
chr8 (30-193)||(31821518-31821667)
chr8 (71-134)||(13108263-13108326)
chr8 (71-134)||(38547382-38547445)
chr8 (71-147)||(5036591-5036667)
chr8 (71-134)||(8609714-8609777)
chr8 (58-148)||(9184524-9184614)
chr8 (88-148)||(11722732-11722792)
chr8 (71-127)||(28433643-28433699)
chr8 (71-147)||(41825570-41825646)
[»] chr2 (22 HSPs)
chr2 (36-193)||(37417373-37417526)
chr2 (30-193)||(39262-39421)
chr2 (30-193)||(92212-92371)
chr2 (30-193)||(25619760-25619919)
chr2 (30-142)||(15432475-15432587)
chr2 (39-193)||(29909534-29909684)
chr2 (39-163)||(41706665-41706789)
chr2 (39-163)||(15372625-15372749)
chr2 (41-165)||(42001733-42001856)
chr2 (85-193)||(42879455-42879559)
chr2 (71-147)||(14389010-14389086)
chr2 (71-134)||(6797662-6797725)
chr2 (71-134)||(10716809-10716872)
chr2 (41-90)||(39723-39772)
chr2 (71-147)||(40560365-40560441)
chr2 (71-147)||(42519131-42519207)
chr2 (71-134)||(16763230-16763293)
chr2 (71-134)||(19908172-19908235)
chr2 (71-129)||(39664674-39664732)
chr2 (71-132)||(11315263-11315324)
chr2 (39-136)||(17946247-17946344)
chr2 (71-147)||(44709671-44709747)
[»] chr1 (19 HSPs)
chr1 (30-193)||(45380849-45381008)
chr1 (39-193)||(42134582-42134732)
chr1 (30-193)||(31801733-31801892)
chr1 (30-193)||(36895375-36895534)
chr1 (36-193)||(35479847-35479999)
chr1 (30-165)||(44157557-44157691)
chr1 (30-190)||(46638672-46638828)
chr1 (41-165)||(33685126-33685249)
chr1 (39-165)||(18183818-18183944)
chr1 (39-163)||(47269330-47269454)
chr1 (68-154)||(6575325-6575411)
chr1 (39-163)||(27940734-27940858)
chr1 (71-147)||(15104583-15104659)
chr1 (79-134)||(27087437-27087492)
chr1 (71-132)||(31238401-31238462)
chr1 (71-127)||(34778045-34778101)
chr1 (71-134)||(4855873-4855936)
chr1 (71-134)||(26225460-26225523)
chr1 (71-134)||(50556003-50556066)
[»] chr7 (21 HSPs)
chr7 (30-193)||(46996567-46996726)
chr7 (30-193)||(40784446-40784605)
chr7 (36-165)||(46812453-46812582)
chr7 (39-192)||(23953906-23954056)
chr7 (39-163)||(8423155-8423279)
chr7 (42-134)||(47341559-47341651)
chr7 (39-163)||(35344164-35344288)
chr7 (41-193)||(33038673-33038821)
chr7 (39-165)||(2492450-2492576)
chr7 (42-193)||(2167579-2167727)
chr7 (71-193)||(27955470-27955588)
chr7 (71-142)||(38613610-38613681)
chr7 (88-163)||(37796104-37796179)
chr7 (39-136)||(1546440-1546537)
chr7 (71-147)||(35693276-35693352)
chr7 (71-134)||(6602490-6602553)
chr7 (71-134)||(30940331-30940394)
chr7 (71-134)||(39859135-39859198)
chr7 (108-142)||(13034820-13034854)
chr7 (68-142)||(31913616-31913690)
chr7 (71-127)||(34691136-34691192)
[»] chr4 (16 HSPs)
chr4 (30-193)||(2827504-2827663)
chr4 (39-193)||(35996163-35996313)
chr4 (30-193)||(51041796-51041955)
chr4 (46-193)||(2350385-2350531)
chr4 (71-193)||(4519476-4519594)
chr4 (40-193)||(44558368-44558517)
chr4 (39-163)||(44794634-44794758)
chr4 (39-163)||(47941937-47942061)
chr4 (39-163)||(10762707-10762831)
chr4 (68-165)||(27624930-27625027)
chr4 (70-162)||(10372611-10372703)
chr4 (71-147)||(2693159-2693235)
chr4 (71-132)||(11255846-11255907)
chr4 (71-134)||(51012080-51012143)
chr4 (71-132)||(25993653-25993714)
chr4 (71-140)||(27382266-27382335)
[»] chr3 (27 HSPs)
chr3 (36-165)||(23774275-23774404)
chr3 (42-189)||(18430148-18430291)
chr3 (30-193)||(24382758-24382917)
chr3 (30-165)||(45257085-45257220)
chr3 (36-193)||(48633977-48634136)
chr3 (43-193)||(33852548-33852694)
chr3 (30-193)||(23888637-23888796)
chr3 (36-192)||(31887322-31887475)
chr3 (36-165)||(2977200-2977329)
chr3 (39-163)||(41020877-41021001)
chr3 (39-193)||(33113055-33113204)
chr3 (72-193)||(1845884-1846001)
chr3 (56-136)||(51454137-51454217)
chr3 (30-111)||(45898242-45898323)
chr3 (71-134)||(2226079-2226142)
chr3 (36-94)||(40508801-40508859)
chr3 (71-147)||(30599844-30599920)
chr3 (71-134)||(53190686-53190749)
chr3 (96-189)||(39641770-39641859)
chr3 (108-193)||(40508854-40508935)
chr3 (71-142)||(5125948-5126019)
chr3 (71-134)||(17515465-17515528)
chr3 (71-134)||(35905639-35905702)
chr3 (71-134)||(41977904-41977967)
chr3 (71-134)||(54898591-54898654)
chr3 (71-164)||(41623777-41623870)
chr3 (71-147)||(42279649-42279725)
[»] chr6 (6 HSPs)
chr6 (39-163)||(29077454-29077578)
chr6 (39-163)||(4641481-4641605)
chr6 (39-163)||(29112426-29112550)
chr6 (39-163)||(2968265-2968389)
chr6 (71-193)||(3018338-3018456)
chr6 (71-134)||(14338381-14338444)
[»] scaffold0477 (1 HSPs)
scaffold0477 (55-163)||(6524-6632)
[»] scaffold1454 (1 HSPs)
scaffold1454 (71-134)||(1417-1480)
[»] scaffold0129 (1 HSPs)
scaffold0129 (68-142)||(4606-4680)
[»] scaffold0564 (1 HSPs)
scaffold0564 (71-127)||(8422-8478)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 38177964 - 38178117
Alignment:
Q  36 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcag 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||||||||||    
T  38177964 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtgacttcctttttgctacgtgtacaagacaacacagcatgcag 38178063  T
Q  136 gacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||| ||||| ||||||||||||||    ||||||||| ||||||||||||||||    
T  38178064 gacgacatatcagcatggctaacggagc----acatggacgaagggacctttttgatg 38178117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 38205188 - 38205341
Alignment:
Q  36 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcag 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||||||||||    
T  38205188 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtgacttcctttttgctacgtgtacaagacaacacagcatgcag 38205287  T
Q  136 gacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||| ||||| ||||||||||||||    ||||||||| ||||||||||||||||    
T  38205288 gacgacatatcagcatggctaacggagc----acatggacgaagggacctttttgatg 38205341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 18728467 - 18728626
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||| ||| |||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  18728467 aaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaattagtcccttaacacgtggcttccttcttgccacgtgtacaagacaacacagc 18728566  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| |  |||||||||| | ||||||| ||||    || |||||||||||||||||||||||    
T  18728567 atgcaaggtgacagatcagcaaggctaacagagc----acttggacggagggacctttttgatg 18728626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 32087773 - 32087614
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||| ||| |||||||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  32087773 aaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaattagtccctgaacacgtggcttccttcttgccacgcgtacaagacaacacagc 32087674  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| | ||| ||||||| | ||||||| ||||    || |||||||||||||||||||||||    
T  32087673 atgcaaggcgatagatcagcaaggctaacagagc----acttggacggagggacctttttgatg 32087614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 165
Target Start/End: Original strand, 32838378 - 32838500
Alignment:
Q  43 aagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgaca 142  Q
    |||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||| |||||||||    
T  32838378 aagtgaaaattgaactttttccaaatcattcaaattattccttgaacacgtggcttccttcttgctatgtgtacaagacaacacagcatgtaggacgaca 32838477  T
Q  143 gatcagtatggctaacggagcac 165  Q
     ||||  ||| ||||||||||||    
T  32838478 tatcaacatgactaacggagcac 32838500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 33256659 - 33256500
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||||||| |||||||| ||||||| ||||||||||||||| ||||||||||  |||||||||||||||||    
T  33256659 aaaataaactgaaaagtgaaaactcaacatttttcaattcaatcaaattagtccctgaacacgtggcttccttcttgccactcgtacaagacaacacagc 33256560  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| |  |||||||||| | |||||||||||     || ||||||||||||| |||||||||    
T  33256559 atgcaaggtgacagatcagcaaggctaacggag----gacttggacggagggacttttttgatg 33256500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 38597157 - 38597045
Alignment:
Q  77 ttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagcacatacatggacg 176  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||    | || |||||     
T  38597157 ttagtccttgaacacgcggcttccttcttgccacgtgtacaagacaacacagcatgcagggcgacagatcagcacggctaacgga----acacttggaca 38597062  T
Q  177 gagggacctttttgatg 193  Q
    |||||||||||||||||    
T  38597061 gagggacctttttgatg 38597045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 35395565 - 35395433
Alignment:
Q  55 aacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggc 154  Q
    |||||||| ||| |||||||| ||||||| |||||| |||||||| ||||||||||| ||||||||||||||  |||||| | ||||| ||||| |||||    
T  35395565 aactttttccaattcaatcaaattagtccctgaacatgtggcttccttcttgccacgcgtacaagacaacac--catgcaaggcgacatatcagcatggc 35395468  T
Q  155 taacggagcacatacatggacggagggacctttttgatg 193  Q
    |||| ||||    || |||||||||||||||||||||||    
T  35395467 taacagagc----acttggacggagggacctttttgatg 35395433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 35292256 - 35292381
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    ||||||||||||| || | ||||||||  |  ||||| ||||||||||||||||| ||||| || ||||||||||||||||||| |||| ||||  || |    
T  35292256 tgaaaagtgaaaactggaattttttcactttcatcaaattagtccttgaacacgtagcttcctttttgccacgtgtacaagacagcacaacatgttgggc 35292355  T
Q  139 gacagatcagtatggctaacggagca 164  Q
    |||||||||| || ||||||||||||    
T  35292356 gacagatcagaatagctaacggagca 35292381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 43317934 - 43318080
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    ||||||||||||| |||| ||||| ||  |  ||||| ||||||||||||||||||||||| || ||||||| ||||||||||| |||| ||||| || |    
T  43317934 tgaaaagtgaaaactgaaatttttccactttcatcaaattagtccttgaacacgtggcttcctttttgccacatgtacaagacagcacaacatgctgggc 43318033  T
Q  139 gacagatcagtatggctaacggagcacatacatggacggagggaccttttt 189  Q
    |||| ||| | ||||||||| ||||    || |||||||||||||||||||    
T  43318034 gacatatcggcatggctaacagagc----acttggacggagggaccttttt 43318080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 17574535 - 17574472
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||||||||||    
T  17574535 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagcatgca 17574472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 24496952 - 24496884
Alignment:
Q  80 gtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcag 148  Q
    ||||||| |||| || |||| || ||| ||||||||| |||||||| ||||||||||||||||||||||    
T  24496952 gtccttgtacacatgacttccttgttgacacgtgtacgagacaacatagcatgcaggacgacagatcag 24496884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 7268060 - 7267998
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgc 133  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||| |||||    
T  7268060 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacatcatgc 7267998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 18624914 - 18624990
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| |||||||| | | || ||| |||||||| ||||||||||| |||||| || |||| ||||    
T  18624914 atcaaattagtccttgtacacgtggttgccttgttgacacgtgtataagacaacacaacatgcaagaagacacatca 18624990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 7e-51; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 42897648 - 42897798
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||||||| ||||| ||||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42897648 tgaaaagtgataattggactttttccaaataaatcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagcatgcaggac 42897747  T
Q  139 gacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    |||||||||| ||||||||| ||||    || |||||||||||||||||||||||    
T  42897748 gacagatcagcatggctaacagagc----acttggacggagggacctttttgatg 42897798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 8654758 - 8654599
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| || ||||||||||||| |||||||||| ||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||  ||    
T  8654758 aaaataaattgaaaagtgaaaagtgaactttttccaattcaatcaaattagtccttgaacatgtggcttccttcttgccacgtgtacaagacaacattgc 8654659  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||| |||||  |||| ||||||||||||||    || |||||||||||||| ||||||||    
T  8654658 atgcagggcgacatgtcagcatggctaacggagc----acttggacggagggacccttttgatg 8654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 1320865 - 1320764
Alignment:
Q  41 aaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacga 140  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||    
T  1320865 aaaagtgaaaactgaacttttttcaattcaatcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacatagcatgcagggcga 1320766  T
Q  141 ca 142  Q
    ||    
T  1320765 ca 1320764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 37525898 - 37526047
Alignment:
Q  40 gaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacg 139  Q
    ||||||||||||||  ||||||| ||| | |||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||    
T  37525898 gaaaagtgaaaatttgactttttccaattgaatcaaattagtccttgaacacgtggcttccttcttgccacgtgtataagacaacacaacatacaggacg 37525997  T
Q  140 acagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||||  ||| ||||| | ||    || |||||||||||||||||||||||    
T  37525998 acagatcaacatgactaacagcgc----acttggacggagggacctttttgatg 37526047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 32822624 - 32822501
Alignment:
Q  25 aaaataaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaac 124  Q
    |||| ||||| |||| ||||||||||||||||||||||  || |||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  32822624 aaaaaaaaataaactaaaaagtgaaaattgaactttttcaaattcaatcaaattagtccctgaacacgtggcttccttcttgccacgcgtacaagacaac 32822525  T
Q  125 acagcatgcaggacgacagatcag 148  Q
    | |||||||| | |||||||||||    
T  32822524 aaagcatgcatggcgacagatcag 32822501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 33750244 - 33750408
Alignment:
Q  25 aaaataaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaac 124  Q
    |||| ||||| |||||||||||||||| | ||| |||| ||| |||||||| || |||| ||||||| ||||||| ||||||||||| ||||||||||||    
T  33750244 aaaaaaaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaattcgtccctgaacacatggcttccttcttgccacgcgtacaagacaac 33750343  T
Q  125 acagcatgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||| |||||| ||||||||||||  || |||||| ||||    || |||||||||||||||||||||||    
T  33750344 acaacatgcaagacgacagatcaacatcgctaacagagc----acttggacggagggacctttttgatg 33750408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 33160019 - 33160148
Alignment:
Q  36 aactgaaaagtgaaaa-ttgaacttttttcaaatcaatcaagttagtccttgaacacgtg-gcttcgttcttgccacgtgtacaagacaacacagcatgc 133  Q
    |||||||||||||||| ||||| ||||| ||| |||||||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||    
T  33160019 aactgaaaagtgaaaacttgaa-tttttccaattcaatcaaattagtccttgaacacgtgagcttc-ttcttgccacgtgtataagacaacacaacatgc 33160116  T
Q  134 aggacgacagatcagtatggctaacggagcac 165  Q
    ||| ||||||||||| ||||||||| ||||||    
T  33160117 agggcgacagatcagcatggctaacagagcac 33160148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 38882655 - 38882797
Alignment:
Q  23 gaaaaataaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagaca 122  Q
    |||||| ||| | |||||||||||||||| || | ||||| ||  || || || || ||||||||||||||| |||| || |||||||| ||||||||||    
T  38882655 gaaaaaaaaattaaactgaaaagtgaaaactgtaatttttccacttccattaaattggtccttgaacacgtgacttccttgttgccacgagtacaagaca 38882754  T
Q  123 acacagcatgcaggacgacagatcagtatggctaacggagcac 165  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  38882755 acacagcatgcaggacgacagatcaacatggctaacggagcac 38882797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 462237 - 462370
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| ||||||| |||||||| ||||||||||  || |||||||| |||||||||||||||   ||||| ||||||||||||||| |||| |||||| |    
T  462237 aaaataaactgaagagtgaaaactgaactttttcaaattcaatcaaattagtccttgaacact--gcttccttcttgccacgtgtataagataacacaac 462334  T
Q  130 atgcaggacgacagatcagtatggctaacggagcac 165  Q
    ||||| | ||||| ||||| ||||||||| ||||||    
T  462335 atgcacggcgacaaatcagcatggctaacagagcac 462370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 31201017 - 31201141
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||| || |||| |||||||||||  |||||||||||||| |||||| | |    
T  31201017 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacatgacttccttcttgccacgcatacaagacaacacatcatgcaaggc 31201116  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  31201117 gacatgtcagcatggctaacggagc 31201141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 31821667 - 31821518
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||| ||||||| | || ||||| ||| |||||||| ||||||| ||||||||||||||| ||||         |||||||||||||| |    
T  31821667 aaaataaactgaaatgtgaaaactcaaattttt-caattcaatcaaattagtccctgaacacgtggcttccttct---------tacaagacaacacatc 31821578  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| ||||||||||||| | ||||||| |||     || |||||||||||||||||||||||    
T  31821577 atgcaagacgacagatcagcaaggctaacagag----gacttggacggagggacctttttgatg 31821518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 13108263 - 13108326
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||||||||||    
T  13108263 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagcatgca 13108326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 38547445 - 38547382
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||||||||||    
T  38547445 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagcatgca 38547382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 5036667 - 5036591
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||| |||||| || |||| ||||    
T  5036667 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacaacatgcaagaggacacatca 5036591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 8609714 - 8609777
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || | | |||||||||||||||||||||||||||    
T  8609714 atcaatttagtccttgtacacgtggctgccttgtcgacacgtgtacaagacaacacagcatgca 8609777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 9184614 - 9184524
Alignment:
Q  58 ttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcag 148  Q
    ||||||||  || ||||| || ||| ||| |||||||| ||| || ||| ||| |||||||||||||||| |||||||| |||||||||||    
T  9184614 ttttttcatttccatcaaattggtctttgtacacgtggattccttgttgacacatgtacaagacaacacatcatgcagggcgacagatcag 9184524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 11722732 - 11722792
Alignment:
Q  88 acacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcag 148  Q
    |||||||||||| || ||| ||||||||||| |||||||| |||||| ||||||| |||||    
T  11722732 acacgtggcttccttgttgacacgtgtacaacacaacacaacatgcaagacgacatatcag 11722792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 28433643 - 28433699
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacaca 127  Q
    ||||| ||||||| || |||||||||||| || || ||||||||||||| |||||||    
T  28433643 atcaatttagtccatgtacacgtggcttcctttttcccacgtgtacaagccaacaca 28433699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 41825570 - 41825646
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| ||||||| || | || ||| || ||||||| |||||||||||||||| || |||| ||||    
T  41825570 atcaaattagtccttgtacacgtgactgccttgttgacatgtgtacaggacaacacagcatgcaagaagacacatca 41825646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 37417526 - 37417373
Alignment:
Q  36 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcag 135  Q
    ||||||||| ||||||||| ||||||| ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37417526 aactgaaaattgaaaattggactttttccaaatcaattaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagcatgcag 37417427  T
Q  136 gacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    | | ||||||||| ||||||||||||||    || |||||| ||||||||||||||||    
T  37417426 ggcaacagatcagcatggctaacggagc----acttggacgaagggacctttttgatg 37417373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 39262 - 39421
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||| ||| |||||||| || |||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  39262 aaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaatttgtccctgaacacgtggcttccttcttgccacgcgtacaagacaacacagc 39361  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| ||||||| ||||| ||||||||||||    | || ||||||| |||||||||||||||    
T  39362 atgcaagacgacatatcagcatggctaacgga----acacttggacggggggacctttttgatg 39421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 92212 - 92371
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||| ||| |||||||| || |||| ||||||||||||||| ||||||||||  |||||||||||||||||    
T  92212 aaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaatttgtccctgaacacgtggcttccttcttgccacacgtacaagacaacacagc 92311  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| ||||||| ||||| ||||||||||||||    || ||||| |||||||||||||||||    
T  92312 atgcaagacgacatatcagcatggctaacggagc----acttggactgagggacctttttgatg 92371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 25619919 - 25619760
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||| ||||||||||| | |||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||| || |    
T  25619919 aaaataaactaaaaagtgaaaactaaacttttttcaattcaatcaaattagtccttgaacatgtggcttctttcttgccacgtgtataagacaacgcaac 25619820  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||  ||||||||||  ||||||||||||||    || |||| ||||||||||||||||||    
T  25619819 atgcagagcgacagatcaacatggctaacggagc----acttggatggagggacctttttgatg 25619760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 15432587 - 15432475
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||| || |||| ||||||||||||||||||||||||||| |    
T  15432587 aaaataaactgaaaagtgaaaactgaactttttccaattcaatcaaattagtccttgaacacatgacttccttcttgccacgtgtacaagacaacacaac 15432488  T
Q  130 atgcaggacgaca 142  Q
    ||||||| |||||    
T  15432487 atgcagggcgaca 15432475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 29909534 - 29909684
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    ||||||||||||| | ||||||||  || |||||||| ||||||| | ||||||||||||| ||||||||||| ||||||||||||||| ||||||   |    
T  29909534 tgaaaagtgaaaactcaactttttcaaattcaatcaaattagtcccttaacacgtggcttccttcttgccacgcgtacaagacaacacaacatgcaacgc 29909633  T
Q  139 gacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    |||||||||  ||||||||| ||||    || |||||||||||||||||||||||    
T  29909634 gacagatcaacatggctaacagagc----acttggacggagggacctttttgatg 29909684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 41706789 - 41706665
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| |||||||||| |||| ||||||||||| |||||||||| ||||||||||| | |    
T  41706789 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtgacttccttcttgccacgcgtacaagacagcacagcatgcaaggc 41706690  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  41706689 gacatgtcagcatggctaacggagc 41706665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 15372749 - 15372625
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| |||||||||| |||| |||||| | |    
T  15372749 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaagacagcacaacatgcaaggc 15372650  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  | || ||||||||||||||    
T  15372649 gacatgttagcatggctaacggagc 15372625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 42001856 - 42001733
Alignment:
Q  41 aaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacga 140  Q
    |||||||||||| ||| ||||| ||| |||||||| | |||||||||||||||| |||| |||||| ||||||||||||||||| || |||||||| |||    
T  42001856 aaaagtgaaaat-gaattttttccaattcaatcaaatcagtccttgaacacgtgacttccttcttgtcacgtgtacaagacaactcaacatgcagggcga 42001758  T
Q  141 cagatcagtatggctaacggagcac 165  Q
    || ||||  |||||||||| |||||    
T  42001757 cacatcaacatggctaacgaagcac 42001733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 42879559 - 42879455
Alignment:
Q  85 tgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacc 184  Q
    |||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||||    | || ||||||||||||||    
T  42879559 tgaacacgtgacttccttcttgtcacgtgtacaagacaacacagcatgcagggcgacatatcagcatgactaacgga----acacttggacggagggacc 42879464  T
Q  185 tttttgatg 193  Q
    |||||||||    
T  42879463 tttttgatg 42879455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 14389010 - 14389086
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    |||||||||||||||| |||||||||| | || ||| |||||||||||||||||||| |||||| || |||| ||||    
T  14389010 atcaagttagtccttgtacacgtggctgccttattgacacgtgtacaagacaacacaacatgcaagaggacacatca 14389086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 6797725 - 6797662
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||| ||||||    
T  6797725 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacatcatgca 6797662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 10716809 - 10716872
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| || ||||||| |||||||||||| || ||| |||||||||||||||||||| ||||||    
T  10716809 atcaaattggtccttgtacacgtggcttccttgttgacacgtgtacaagacaacacaacatgca 10716872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 39772 - 39723
Alignment:
Q  41 aaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaaca 90  Q
    ||||||||||| | |||||||| |||||||||||| ||||||||||||||    
T  39772 aaaagtgaaaagtaaactttttccaaatcaatcaaattagtccttgaaca 39723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 40560441 - 40560365
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| |||||||||| | || ||| |||| ||||| |||||||||||||||| || |||| ||||    
T  40560441 atcaatttagtccttgtacacgtggctgccttgttgacacgcgtacatgacaacacagcatgcaagaggacacatca 40560365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 42519131 - 42519207
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| ||||||| || | || ||| |||||||||| |||||||||||||||| || |||| ||||    
T  42519131 atcaatttagtccttgtacacgtgactgccttgttgacacgtgtacaggacaacacagcatgcaagaggacacatca 42519207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 16763293 - 16763230
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||| ||| ||||||    
T  16763293 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaaaacaacatgca 16763230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 19908172 - 19908235
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| ||||||||||   || ||| |||||||||| ||||||||||||||||    
T  19908172 atcaaattagtccttgtacacgtggctgtcttgttgacacgtgtacatgacaacacagcatgca 19908235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 39664674 - 39664732
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||| |||||||||||    
T  39664674 atcaaattagtccttgtacacgtggctgccttgttgacacgtgtacatgacaacacagc 39664732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 11315263 - 11315324
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatg 132  Q
    ||||| || ||||||| ||| |||||||| || ||| |||||||||||||||||||| ||||    
T  11315263 atcaaattggtccttgtacatgtggcttccttgttgacacgtgtacaagacaacacaacatg 11315324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 17946344 - 17946247
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcagg 136  Q
    ||||||||||||| |||| ||||| |   || ||||| |||||||||| ||||||| |||| || ||| || ||||||| ||||||||| ||| ||||    
T  17946344 tgaaaagtgaaaactgaattttttgcgtttccatcaatttagtccttgtacacgtgacttcctttttgacatgtgtacatgacaacacaacatacagg 17946247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 44709671 - 44709747
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| |||||||| |   || ||| |||||||||||||||||||| |||||| || |||| ||||    
T  44709671 atcaatttagtccttgtacacgtggatgtcttgttgacacgtgtacaagacaacacaacatgcaagaggacatatca 44709747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 45380849 - 45381008
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| || |||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45380849 aaaataaagtgaaaagtgaaaattggactttttccaattcaatcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagc 45380948  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||| |||||  |||  ||||||||||||||    || |||||||||| ||||||||||||    
T  45380949 atgcagggcgacatgtcaccatggctaacggagc----acttggacggaggaacctttttgatg 45381008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 42134732 - 42134582
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    ||||||||||||| || ||||||| ||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||      
T  42134732 tgaaaagtgaaaactggactttttccaattcaatcaaattagtccttgaacatgtggcttccttcttgccacgtgtacaagacaacacagcatgcagggt 42134633  T
Q  139 gacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||  |||  ||||||||||||||    || |||||||||||||||||||||||    
T  42134632 gacatgtcaacatggctaacggagc----acttggacggagggacctttttgatg 42134582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 31801892 - 31801733
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||| ||| |||||||| || |||| |||||||||| |||| ||||||||||| ||||||||||||||| |    
T  31801892 aaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaattcgtccctgaacacgtgacttccttcttgccacgcgtacaagacaacacaac 31801793  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| ||||||| ||||| ||||||||||||||    || |||||||||||||||||||||||    
T  31801792 atgcaagacgacaaatcagcatggctaacggagc----acttggacggagggacctttttgatg 31801733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 36895375 - 36895534
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| || ||||||||||||| | ||| |||| ||| |||||||| || |||| ||||||||||||||| ||||||||||| ||||||||||||||| |    
T  36895375 aaaataaattgaaaagtgaaaactcaacattttccaattcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaagacaacacaac 36895474  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| ||||||||||||| ||||||||||||||    || |||||| ||||||||||||||||    
T  36895475 atgcaagacgacagatcagcatggctaacggagc----acttggacgaagggacctttttgatg 36895534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 36 - 193
Target Start/End: Original strand, 35479847 - 35479999
Alignment:
Q  36 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcag 135  Q
    |||||||||||||||||||||||||||  || |||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||     
T  35479847 aactgaaaagtgaaaattgaactttttcaaattcaatcaaattagtccctgaacacgtggcttctttcttgccacgcgtacaagacaacaaagcatgcat 35479946  T
Q  136 gacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    | ||||||||||| || |||||| ||||    || |||||||| ||||||||||||||    
T  35479947 ggcgacagatcagcat-gctaacagagc----acttggacggaaggacctttttgatg 35479999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 44157691 - 44157557
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| || ||||||||||||| |||||||||| ||| |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| |    
T  44157691 aaaataaagtgaaaagtgaaaactgaactttttccaattcaatcaaattagtc-ttgaacacgtggcttccttcttgccacgtgtacaagacaacacaac 44157593  T
Q  130 atgcaggacgacagatcagtatggctaacggagcac 165  Q
    ||||||| |||||  ||| ||||||| |||||||||    
T  44157592 atgcagggcgacatgtcactatggctgacggagcac 44157557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 46638672 - 46638828
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||| ||| |||||||| || |||| ||||||||||||||| || |||||||| ||||||||||||||| |    
T  46638672 aaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaattcgtccctgaacacgtggcttcctttttgccacgcgtacaagacaacacaac 46638771  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttg 190  Q
    ||||| | ||||||||||| ||||||||||||||    || ||||||||||||||||||||    
T  46638772 atgcaaggcgacagatcagcatggctaacggagc----acttggacggagggacctttttg 46638828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 165
Target Start/End: Original strand, 33685126 - 33685249
Alignment:
Q  41 aaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacga 140  Q
    |||||||||||  ||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| |||    
T  33685126 aaaagtgaaaac-gaactttttccaattcaatcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaactcaacatgcagggcga 33685224  T
Q  141 cagatcagtatggctaacggagcac 165  Q
    || ||| | ||||||||||||||||    
T  33685225 cacatcggcatggctaacggagcac 33685249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 18183818 - 18183944
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    ||||||||||||| || | ||||| ||  || ||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| ||||    
T  18183818 tgaaaagtgaaaactggaatttttccacttccatcaaattagtccttgaacacgtggcttcttttttgccacgtgtacaagacaacacaacatgctggac 18183917  T
Q  139 gacagatcagtatggctaacggagcac 165  Q
    |||| ||||| ||||||||||||||||    
T  18183918 gacaaatcagcatggctaacggagcac 18183944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 47269330 - 47269454
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| ||||| |||| |||| |||||  |||    
T  47269330 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaggacagcacaccatgccagac 47269429  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  47269430 gacatgtcagcatggctaacggagc 47269454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 6575411 - 6575325
Alignment:
Q  68 tcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggc 154  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||| ||||| |||||    
T  6575411 tcaatcaaattagtccttgaacacgtggcttccttcttgccacgcgtacaagacaacaaagcatgcatgacgacatatcagcatggc 6575325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 27940858 - 27940734
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| |||||||||| |||| |||||| |      
T  27940858 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaagacagcacatcatgcaaggt 27940759  T
Q  139 gacagatcagtatggctaacggagc 163  Q
     |||  |||| ||||||||||||||    
T  27940758 tacatgtcagcatggctaacggagc 27940734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 15104659 - 15104583
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| |||||||||| | || ||| ||||||||||||||||||||||||||| || |||| ||||    
T  15104659 atcaaattagtccttgtacacgtggctgccttattgacacgtgtacaagacaacacagcatgcaagaagacacatca 15104583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 27087492 - 27087437
Alignment:
Q  79 agtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    |||||||| |||||||||| | || ||| |||||||||||||||||||||||||||    
T  27087492 agtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagcatgca 27087437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 31238401 - 31238462
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatg 132  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||| ||||||||||||||    
T  31238401 atcaaattagtccttgtacacgtggctgccttgttgacacgtgtacatgacaacacagcatg 31238462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 34778045 - 34778101
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacaca 127  Q
    ||||| |||||||||| |||||||||| | || ||| ||||||||||||||||||||    
T  34778045 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 34778101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 4855873 - 4855936
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| ||||||| || | || ||| |||||||||||||||||||| ||||||    
T  4855873 atcaatttagtccttgtacacgtgactgccttgttgacacgtgtacaagacaacacaacatgca 4855936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 26225460 - 26225523
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| ||| |||||| | || ||| |||||||||||||||||||| ||||||    
T  26225460 atcaatttagtccttgtacatgtggctgctttgttgacacgtgtacaagacaacacatcatgca 26225523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 50556003 - 50556066
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| ||||||| || | || ||| |||||||||| ||||||||||||||||    
T  50556003 atcaaattagtccttgtacacgtgactcccttgttgacacgtgtacatgacaacacagcatgca 50556066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 46996567 - 46996726
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||| ||| |||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  46996567 aaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaattcgtccttgaacacgtggcttccttcttgccacgcgtacaagacaacacagc 46996666  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| | ||||||||||| || |||||||||||    || |||||||||||||||||||||||    
T  46996667 atgcaaggcgacagatcagcatcgctaacggagc----acttggacggagggacctttttgatg 46996726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 40784605 - 40784446
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| ||||||||||||||||||  || |||| ||| |||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||| |    
T  40784605 aaaataaactgaaaagtgaaaatttgaccttttccaattcaatcaaattagtccttgaacatgtggcttccttcttgccacgtgtataagacaacacaac 40784506  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||||||||||||||| |||  ||||  ||| |||   |||||||||||||||||||||||    
T  40784505 atgcaggacgacagatcagcatgattaac--agcgcat--ttggacggagggacctttttgatg 40784446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 46812453 - 46812582
Alignment:
Q  36 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcag 135  Q
    |||||||||||||||||||||| ||||  || ||||||||  |||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  46812453 aactgaaaagtgaaaattgaaccttttcaaattcaatcaaagtagtccttgaacacgtggcttccttcttgccacacgtacaagacaacacagcatgcag 46812552  T
Q  136 gacgacagatcagtatggctaacggagcac 165  Q
    | ||||| ||||| ||||||||| ||||||    
T  46812553 ggcgacatatcagcatggctaacagagcac 46812582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 23954056 - 23953906
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaa-atcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcagga 137  Q
    |||||||||||||||| | ||||| ||  ||| ||||| |||||||| |||||||||||||| || |||||||||||||||||||||||| |||||| |     
T  23954056 tgaaaagtgaaaattggaatttttccactatccatcaaattagtcctggaacacgtggcttcctttttgccacgtgtacaagacaacacaacatgcatgg 23953957  T
Q  138 cgacagatcagtatggctaacggagcacatacatggacggagggacctttttgat 192  Q
    ||||| ||||| ||||||||||||||    || ||||||||||||||||||||||    
T  23953956 cgacatatcagcatggctaacggagc----acttggacggagggacctttttgat 23953906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 8423155 - 8423279
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| | |    
T  8423155 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaagacagcacagcatgcaaggc 8423254  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  8423255 gacatgtcagcatggctaacggagc 8423279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 47341559 - 47341651
Alignment:
Q  42 aaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    |||||||||| || ||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47341559 aaagtgaaaactggactttttccaattcaatcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacagcatgca 47341651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 35344164 - 35344288
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| | |    
T  35344164 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaagacagcacagcatgcaaggc 35344263  T
Q  139 gacagatcagtatggctaacggagc 163  Q
     |||  |||| ||||||||||||||    
T  35344264 aacatgtcagcatggctaacggagc 35344288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 33038673 - 33038821
Alignment:
Q  41 aaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacga 140  Q
    ||||||||||| |  || |||| ||| |||||||| | ||||||||||||| ||||||| |||||| |||||||| ||||||||||| ||||||||||||    
T  33038673 aaaagtgaaaactagacattttccaattcaatcaaatcagtccttgaacacatggcttccttcttgacacgtgtataagacaacacaacatgcaggacga 33038772  T
Q  141 cagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    |||||||  ||| ||||| ||||    || |||||||||||||||||||||||    
T  33038773 cagatcaacatgcctaacagagc----acttggacggagggacctttttgatg 33038821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 2492576 - 2492450
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||||||||||||||| ||||||||  || ||||| |||||||||||||||||| |||| || ||||||||||||||||||| || ||||||  || |    
T  2492576 tgaaaagtgaaaattgaaattttttcacttccatcaaattagtccttgaacacgtgacttcctttttgccacgtgtacaagacagcagagcatgttgggc 2492477  T
Q  139 gacagatcagtatggctaacggagcac 165  Q
    || ||||||  ||||||||||||||||    
T  2492476 gatagatcaacatggctaacggagcac 2492450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 2167727 - 2167579
Alignment:
Q  42 aaagtgaaaattgaacttttttcaa-atcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacga 140  Q
    |||||||||| |||| ||||| ||  ||| ||||| ||||||||||||| ||||||||  || |||||||||||||||||||||||| ||||||||  ||    
T  2167727 aaagtgaaaactgaaatttttccagtatccatcaaattagtccttgaacgcgtggctttctttttgccacgtgtacaagacaacacatcatgcagggtga 2167628  T
Q  141 cagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||  |||| |||||||| |||||    || |||||||||||||||||||||||    
T  2167627 cacgtcagcatggctaatggagc----acttggacggagggacctttttgatg 2167579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 27955588 - 27955470
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagcacataca 170  Q
    ||||| || |||||||||||| ||||||| || |||||| ||||||||||||||||| ||||||| |||||| ||||| ||| ||||||||||    ||     
T  27955588 atcaaattggtccttgaacacatggcttccttgttgccaagtgtacaagacaacacaacatgcagcacgacacatcagcatgactaacggagc----act 27955493  T
Q  171 tggacggagggacctttttgatg 193  Q
    ||||||||||||||| |||||||    
T  27955492 tggacggagggacctctttgatg 27955470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 38613681 - 38613610
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgaca 142  Q
    ||||||||||||||||||||||||||||  || || ||||||||||||||||||||| |||||||| |||||    
T  38613681 atcaagttagtccttgaacacgtggctttctttttcccacgtgtacaagacaacacaccatgcagggcgaca 38613610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 37796104 - 37796179
Alignment:
Q  88 acacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagc 163  Q
    |||||||||| | |||||| |||||||| ||||||||||| |||||| || |||| ||||| || |||||||||||    
T  37796104 acacgtggctgccttcttgacacgtgtagaagacaacacaacatgcaagaggacacatcagcatcgctaacggagc 37796179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 1546537 - 1546440
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcagg 136  Q
    ||||||||||||| |||| ||||| |   || ||||| |||||||||| ||||||| |||| || ||| ||||| || ||||||||||| ||||||||    
T  1546537 tgaaaagtgaaaactgaattttttgcgtttccatcaatttagtccttgtacacgtgacttcctttttgacacgtatataagacaacacaacatgcagg 1546440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 35693276 - 35693352
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||  |||||| || |||| ||||    
T  35693276 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacactacatgcaagaggacacatca 35693352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 6602553 - 6602490
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | |  ||| |||||||||| ||||||||||||||||    
T  6602553 atcaaattagtccttgtacacgtggctgcctggttgacacgtgtacatgacaacacagcatgca 6602490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 30940331 - 30940394
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| || ||||||| ||||||||||||||||    
T  30940331 atcaatttagtccttgtacacgtggctgccttgttgacatgtgtacaggacaacacagcatgca 30940394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 39859135 - 39859198
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| ||||||||||   || ||| |||||||||| ||||||||||||||||    
T  39859135 atcaaattagtccttgtacacgtggctgtcttgttgacacgtgtacatgacaacacagcatgca 39859198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 13034854 - 13034820
Alignment:
Q  108 cacgtgtacaagacaacacagcatgcaggacgaca 142  Q
    |||||||||| ||||||||||||||||||||||||    
T  13034854 cacgtgtacaggacaacacagcatgcaggacgaca 13034820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 31913690 - 31913616
Alignment:
Q  68 tcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgaca 142  Q
    |||||||| || ||||||| |||||||||||| || | | ||||||| ||||||||||   ||||||||||||||    
T  31913690 tcaatcaaattggtccttgtacacgtggcttccttgtagacacgtgtgcaagacaacaagccatgcaggacgaca 31913616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 34691192 - 34691136
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacaca 127  Q
    ||||| ||| ||| || |||||||||||| || |||||||||||||||| |||||||    
T  34691192 atcaatttaatccctgtacacgtggcttccttgttgccacgtgtacaagccaacaca 34691136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 2827663 - 2827504
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||||||| |||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |    
T  2827663 aaaataaactgaaaagtgaaaactcaacatttttcaattcaatcaaattagtccctgaacacgtggcttccttcttgccacgcgtacaagacaacacatc 2827564  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| ||||||||||||| | |||||||||||     || |||||||||||||||||||||||    
T  2827563 atgcaagacgacagatcagcaaggctaacggag----gacttggacggagggacctttttgatg 2827504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 35996313 - 35996163
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    ||||||||||||| ||| |||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |    
T  35996313 tgaaaagtgaaaagtgatctttttccaattcaatcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagacaacacaacatgcatggc 35996214  T
Q  139 gacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||  |||| ||||||||||||||    || |||||||||||||||||||||||    
T  35996213 gacatgtcagcatggctaacggagc----acttggacggagggacctttttgatg 35996163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 51041796 - 51041955
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||  |  ||||||| ||| |||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||| |    
T  51041796 aaaataaactgaaaagtgaaagctagactttttccaattcaatcaaattagtccttgaacatgtggcttccttcttgccacgtgtataagacaacacaac 51041895  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||| ||||||||||| |||||||||  |||    || |||| ||||||||||||||||||    
T  51041896 atgcagggcgacagatcagcatggctaacaaagc----acttggatggagggacctttttgatg 51041955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 2350385 - 2350531
Alignment:
Q  46 tgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaag---acaacacagcatgcaggacgaca 142  Q
    |||||| |||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||  |||||    
T  2350385 tgaaaagtgaactttttccaattcaatcaaattagtccttgaacacgtggcttccttcttgccacgtgtacaagagtacaacacagcatgcagagcgaca 2350484  T
Q  143 gatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
      |||| ||||||||||||||    || ||||| |||||||||||||||||    
T  2350485 tgtcagcatggctaacggagc----acttggacagagggacctttttgatg 2350531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 4519594 - 4519476
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagcacataca 170  Q
    ||||| |||||||||||||||||| |||  || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    |      
T  4519594 atcaaattagtccttgaacacgtgactttctttttgccacgtgtacaagacaacacagcatgcagggcgacagatcagcatggctaacggagc----att 4519499  T
Q  171 tggacggagggacctttttgatg 193  Q
    |||||||||||||||||||||||    
T  4519498 tggacggagggacctttttgatg 4519476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 44558368 - 44558517
Alignment:
Q  40 gaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacg 139  Q
    |||||||||||| ||||||||||  || |||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |  |    
T  44558368 gaaaagtgaaaactgaactttttcaaattcaatcaaatgagtccttgaacacgtggcttccttcttgccacgcgtacaagacaacagagcatgcatggtg 44558467  T
Q  140 acagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||||| |||||||||  |||    || |||||||| ||||||||||||||    
T  44558468 acagatcagcatggctaacatagc----acttggacggaaggacctttttgatg 44558517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 44794634 - 44794758
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| | |    
T  44794634 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaagacatcacagcatgcaaggc 44794733  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  44794734 gacatgtcagcatggctaacggagc 44794758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 47942061 - 47941937
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| | |    
T  47942061 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccttgaacacgtggcttccttcttgccacgcgtacaagacagcacaacatgcaaggc 47941962  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  47941961 gacatgtcagcatggctaacggagc 47941937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 10762831 - 10762707
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| ||||| |||| ||||||||||  | |    
T  10762831 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaggacagcacagcatgccaggc 10762732  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  10762731 gacatgtcagcatggctaacggagc 10762707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 27625027 - 27624930
Alignment:
Q  68 tcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagcac 165  Q
    |||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||| | ||||||||||  ||||||||| ||||||    
T  27625027 tcaatcaaattagtccttgaacacgtggcttccttcttgccacacgtacaagacaacaaagcatgcatggcgacagatcaacatggctaacagagcac 27624930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 10372611 - 10372703
Alignment:
Q  70 aatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggag 162  Q
    |||||| || |||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| | |||||  |||| |||||||||||||    
T  10372611 aatcaaattcgtccctgaacacgtggcttctttcttgccacgcgtacaagacagcacagcatgcaaggcgacatgtcagcatggctaacggag 10372703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 2693159 - 2693235
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| |||||||||| | |||||| |||||||||| |||||||||||||||| || |||| ||||    
T  2693159 atcaaattagtccttgtacacgtggctgccttcttgacacgtgtacaggacaacacagcatgcaagatgacacatca 2693235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 11255846 - 11255907
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatg 132  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||||||||    
T  11255846 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacagcatg 11255907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 51012143 - 51012080
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||| ||||||    
T  51012143 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacatcatgca 51012080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 25993714 - 25993653
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatg 132  Q
    ||||| || |||| || |||||||||||| || ||| |||||||||||||||||||| ||||    
T  25993714 atcaaattggtccatgtacacgtggcttcattgttgacacgtgtacaagacaacacatcatg 25993653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 27382335 - 27382266
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacga 140  Q
    ||||| |||||||||| |||||||||||  || ||| ||||||||||||||| ||   ||||||||||||    
T  27382335 atcaaattagtccttgtacacgtggctttcttgttgacacgtgtacaagacaccatgacatgcaggacga 27382266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 23774404 - 23774275
Alignment:
Q  36 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcag 135  Q
    ||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||    
T  23774404 aactgaaaagtgaaaattggactttttccaaatcaatcgaattagtccttgaacacgtggcttccttattgccacgtgtacaagacaacacatcatgcag 23774305  T
Q  136 gacgacagatcagtatggctaacggagcac 165  Q
    | ||||||||||  ||||||||| ||||||    
T  23774304 ggcgacagatcaacatggctaacagagcac 23774275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 42 - 189
Target Start/End: Original strand, 18430148 - 18430291
Alignment:
Q  42 aaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgac 141  Q
    ||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||    
T  18430148 aaagtgaaaattggactttttccaattcaatcaaattagtccttgaacacgtggtttccttcttgccacgtgtacaagacaacacggcatgcagggcgac 18430247  T
Q  142 agatcagtatggctaacggagcacatacatggacggagggaccttttt 189  Q
    |  |||  ||||||||||||||    || |||||||||||||||||||    
T  18430248 atgtcaccatggctaacggagc----acttggacggagggaccttttt 18430291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 24382758 - 24382917
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||| || ||||| ||| || ||||||||||| |    
T  24382758 aaaataaactgaaaagtgaaaactgaactttttccaattcaatcaaattagtccttgaacacgtggcttcctttttgccccgtatataagacaacacaac 24382857  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||| ||||| ||||| ||||||||||||      || |||||||||||||||||||||||    
T  24382858 atgcagggcgacatatcagcatggctaacgga----tgacttggacggagggacctttttgatg 24382917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 45257085 - 45257220
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| || ||||||||||||| || ||||||| ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  45257085 aaaataaagtgaaaagtgaaaactggactttttccaattcaatcaaattagtccttgaacacgtggcttcattcttgccacgtgtacaagacaacacaac 45257184  T
Q  130 atgcaggacgacagatcagtatggctaacggagcac 165  Q
    ||||||| || ||  |||| ||| ||||||||||||    
T  45257185 atgcagggcggcatgtcagcatgactaacggagcac 45257220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 193
Target Start/End: Complemental strand, 48634136 - 48633977
Alignment:
Q  36 aactgaaaagtgaaaattgaactttttt--caaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaag----acaacacagc 129  Q
    ||||||||||||||||||  ||||||||  ||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||    |||||||| |    
T  48634136 aactgaaaagtgaaaattagacttttttttcaattcaatcaaattagtccttgaacacgtggcttcctttttgccacgtgtacaagacaaacaacacatc 48634037  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||||| ||||||||||  ||||||||||||||    || |||||||||||||||||||||||    
T  48634036 atgcagggcgacagatcaacatggctaacggagc----acttggacggagggacctttttgatg 48633977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 33852548 - 33852694
Alignment:
Q  43 aagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgaca 142  Q
    |||||||||||| | ||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| |||||    
T  33852548 aagtgaaaattggattttttccaattcaatcaaattagtccttgaacacgtggcttccttcttgccacgtctacaagacaacacaacatgcagggcgaca 33852647  T
Q  143 gatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
      |||  ||||||||||||||    || ||||| |||||||||||||||||    
T  33852648 tgtcaccatggctaacggagc----acttggacagagggacctttttgatg 33852694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 23888637 - 23888796
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagc 129  Q
    ||||| |||||||||||||||| | ||| |||| ||| |||||||| ||||||| |||||| |||||||| ||||||||||| ||||||||||||||||     
T  23888637 aaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaattagtccctgaacatgtggcttccttcttgccacgcgtacaagacaacacagt 23888736  T
Q  130 atgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    ||||| | ||||||||||| | |||||||||||     |  |||||||||||||||||||||||    
T  23888737 atgcaaggcgacagatcagcaaggctaacggag----gatttggacggagggacctttttgatg 23888796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 31887322 - 31887475
Alignment:
Q  36 aactgaaaagtgaaaattgaacttttttcaa-atcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    |||||||||||||||| || | ||||| ||  ||| ||||| ||||||||||||||  ||||||| || |||||||||||||||||||||||||||||||    
T  31887322 aactgaaaagtgaaaactggaatttttccactatccatcaaattagtccttgaacatatggcttcctttttgccacgtgtacaagacaacacagcatgca 31887421  T
Q  135 ggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgat 192  Q
     | ||||| ||||| ||||||||||||||    || ||||||||||||||||||||||    
T  31887422 aggcgacaaatcagcatggctaacggagc----acttggacggagggacctttttgat 31887475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 2977200 - 2977329
Alignment:
Q  36 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcag 135  Q
    ||||||||||| ||||||| | ||||||||  || ||||| |||||||||||||| |||| ||| |||||||||||||||  |||||||| |||||||||    
T  2977200 aactgaaaagtcaaaattggaattttttcacttccatcaaattagtccttgaacatgtggtttccttcttgccacgtgtattagacaacatagcatgcag 2977299  T
Q  136 gacgacagatcagtatggctaacggagcac 165  Q
    | ||||| ||||| || |||||||||||||    
T  2977300 ggcgacaaatcagcatcgctaacggagcac 2977329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 41020877 - 41021001
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| ||||| |||| ||||||||||  | |    
T  41020877 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaggacagcacagcatgccaggc 41020976  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  41020977 gacatgtcagcatggctaacggagc 41021001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 33113055 - 33113204
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    ||||||||||||| || | ||||| ||  || ||||| ||||||||||||||||||||||| || ||||||||||||||||||| | || ||||| || |    
T  33113055 tgaaaagtgaaaagtggaatttttccacttccatcaaattagtccttgaacacgtggcttcctttttgccacgtgtacaagacagcgcaacatgctgggc 33113154  T
Q  139 gacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    |||||||| | |||||||||||| |||     | |||||||||||||||||||||    
T  33113155 gacagatcggcatggctaacggatcac-----ttgacggagggacctttttgatg 33113204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 1846001 - 1845884
Alignment:
Q  72 tcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagcacatacat 171  Q
    |||| ||||||||||||||||||||||| || |||||||||||| | |||| |||| |||||||| ||||| ||||  |||| |||||||||    || |    
T  1846001 tcaaattagtccttgaacacgtggcttcctttttgccacgtgtataggacatcacatcatgcagggcgacatatcaacatggttaacggagc----actt 1845906  T
Q  172 ggacggagggacctttttgatg 193  Q
    |||||||||||| |||||||||    
T  1845905 ggacggagggacgtttttgatg 1845884  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 51454137 - 51454217
Alignment:
Q  56 acttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcagg 136  Q
    ||||||||||| | |||| | |||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||    
T  51454137 acttttttcaatttaatctaattagtccttgaacacgtggcctccttcttgccacgtgtataagacaacacatcatgcagg 51454217  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 45898242 - 45898323
Alignment:
Q  30 aaaattaactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacg 111  Q
    ||||| |||||||||||||||| | ||| |||| ||| |||||||| ||||||| | ||||||||||||| |||||||||||    
T  45898242 aaaataaactgaaaagtgaaaactcaacattttccaattcaatcaaattagtccctaaacacgtggcttccttcttgccacg 45898323  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 2226079 - 2226142
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||||||||||    
T  2226079 atcaatttagtccttgtacacgtggctaccttgttgacacgtgtacaagacaacacagcatgca 2226142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 40508801 - 40508859
Alignment:
Q  36 aactgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtg 94  Q
    ||||||||||||||||||| ||||||| ||||||||  || ||||||||||||||||||    
T  40508801 aactgaaaagtgaaaattggactttttccaaatcaaaaaaattagtccttgaacacgtg 40508859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 30599844 - 30599920
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| |||||||||| | || ||| || |||||||||||||||||||||||| || |||| ||||    
T  30599844 atcaatttagtccttgtacacgtggctgccttattgacatgtgtacaagacaacacagcatgcaagaggacacatca 30599920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 53190686 - 53190749
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| |||||||||||||||||||| ||||||    
T  53190686 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacacaacatgca 53190749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 39641770 - 39641859
Alignment:
Q  96 cttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagcacatacatggacggagggaccttttt 189  Q
    |||| ||||| |||| |||| ||||||||||| |||||||||||  ||||||  |||||||||||||    ||| || ||||||||||||||||    
T  39641770 cttccttcttaccacatgtataagacaacacaacatgcaggacggtagatcaacatggctaacggag----tacttgaacggagggaccttttt 39641859  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 40508854 - 40508935
Alignment:
Q  108 cacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagcacatacatggacggagggacctttttgatg 193  Q
    |||||||||| ||||||||| |||||||| ||||||||||| | | ||||||||    | || ||||||||||||| |||||||||    
T  40508854 cacgtgtacatgacaacacaacatgcagggcgacagatcagcacgactaacgga----acacttggacggagggacatttttgatg 40508935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 5126019 - 5125948
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgaca 142  Q
    ||||| || ||||||| |||||||||||| || | | ||||||||||||||||||   ||||||||||||||    
T  5126019 atcaaattggtccttgtacacgtggcttctttgtagacacgtgtacaagacaacaggacatgcaggacgaca 5125948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 17515528 - 17515465
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| || ||||||||||||||||| ||||||    
T  17515528 atcaatttagtccttgtacacgtggctgccttattgacaagtgtacaagacaacacaacatgca 17515465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 35905639 - 35905702
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| ||||||||||||||||| || ||||||    
T  35905639 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacccatcatgca 35905702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 41977967 - 41977904
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| ||||||| || | || ||| |||||||||||||||||||| ||||||    
T  41977967 atcaatttagtccttgtacacgtgactgccttgttgacacgtgtacaagacaacacaacatgca 41977904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 54898654 - 54898591
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||||| | || ||| ||||||||||||||||| || ||||||    
T  54898654 atcaatttagtccttgtacacgtggctgccttgttgacacgtgtacaagacaacgcaacatgca 54898591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 41623870 - 41623777
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagca 164  Q
    ||||| || ||||||| |||||||||||| || | | ||||| ||||||||||||   ||||||| ||||||| ||||||   |||||||||||    
T  41623870 atcaaattggtccttgtacacgtggcttccttgtagacacgtatacaagacaacaagacatgcagaacgacagctcagtagcactaacggagca 41623777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 42279725 - 42279649
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatca 147  Q
    ||||| |||||||||| ||||||| || | || ||| |||||||| ||||||||||| |||||| || |||| ||||    
T  42279725 atcaaattagtccttgtacacgtgtctgccttgttgacacgtgtataagacaacacaacatgcaagaggacacatca 42279649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 29077578 - 29077454
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| | |    
T  29077578 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaagacaacacagcatgcaaggc 29077479  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  29077478 gacatgtcagcatggctaacggagc 29077454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 4641605 - 4641481
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| |      
T  4641605 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaagacagcacagcatgcaagga 4641506  T
Q  139 gacagatcagtatggctaacggagc 163  Q
     |||  |||| ||||||||||||||    
T  4641505 aacatgtcagcatggctaacggagc 4641481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 29112550 - 29112426
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| |||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| ||||| |||| ||||||||||  | |    
T  29112550 tgaaaaatgaaaagtgaactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaggacagcacagcatgccaggc 29112451  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| ||||||||||||||    
T  29112450 gacatgtcagcatggctaacggagc 29112426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 2968389 - 2968265
Alignment:
Q  39 tgaaaagtgaaaattgaacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggac 138  Q
    |||||| |||||| ||||| |||| |||||||||||| || |||  ||||||||||||||| ||||||||||| |||||||||| |||| |||||| | |    
T  2968389 tgaaaaatgaaaagtgaacattttccaaatcaatcaaattcgtctctgaacacgtggcttccttcttgccacgcgtacaagacagcacaacatgcaaggc 2968290  T
Q  139 gacagatcagtatggctaacggagc 163  Q
    ||||  |||| | ||||||||||||    
T  2968289 gacatgtcagcacggctaacggagc 2968265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 3018338 - 3018456
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggctaacggagcacataca 170  Q
    ||||| || |||| |||||| ||||||||  |||||||||| ||||||||||||||| |||||| ||||| ||||||  ||||||||||||||    ||     
T  3018338 atcaaattcgtccctgaacatgtggcttccgtcttgccacgcgtacaagacaacacatcatgcaagacgatagatcaacatggctaacggagc----act 3018433  T
Q  171 tggacggagggacctttttgatg 193  Q
    |||| ||||||||||||||||||    
T  3018434 tggatggagggacctttttgatg 3018456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 14338381 - 14338444
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| || ||||||| |||||||||||| || ||| |||||||||| ||||||||| ||||||    
T  14338381 atcaaattggtccttgtacacgtggcttccttgttgacacgtgtacaggacaacacatcatgca 14338444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 6524 - 6632
Alignment:
Q  55 aacttttttcaaatcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgacagatcagtatggc 154  Q
    |||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| |  ||||  |||| |||||    
T  6524 aactttttccaaatcaatcaaattcgtccctgaacacgtggcttccttcttgccacgcgtacaagacagcacagcatgcaaggtgacatgtcagcatggc 6623  T
Q  155 taacggagc 163  Q
    |||||||||    
T  6624 taacggagc 6632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 1480 - 1417
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgca 134  Q
    ||||| |||||||||| |||||||| | | || ||| |||||||||||||||||||||||||||    
T  1480 atcaatttagtccttgtacacgtggttgccttgttgacacgtgtacaagacaacacagcatgca 1417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 4680 - 4606
Alignment:
Q  68 tcaatcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacacagcatgcaggacgaca 142  Q
    |||||||| || ||||||| |||||||||||| || | | ||||||||||||||||||   ||||||||||||||    
T  4680 tcaatcaaattggtccttgtacacgtggcttccttgtagacacgtgtacaagacaacaagccatgcaggacgaca 4606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 8478 - 8422
Alignment:
Q  71 atcaagttagtccttgaacacgtggcttcgttcttgccacgtgtacaagacaacaca 127  Q
    ||||| ||||| |||| |||||||||| | || ||| ||||||||||||||||||||    
T  8478 atcaatttagtacttgtacacgtggctgccttgttgacacgtgtacaagacaacaca 8422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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