View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9423_low_1 (Length: 452)

Name: NF9423_low_1
Description: NF9423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9423_low_1
NF9423_low_1
[»] chr1 (18 HSPs)
chr1 (14-273)||(35162929-35163190)
chr1 (19-273)||(30403109-30403365)
chr1 (19-273)||(30409666-30409922)
chr1 (19-248)||(29394291-29394520)
chr1 (142-273)||(29393903-29394036)
chr1 (142-252)||(30402771-30402881)
chr1 (142-252)||(30409328-30409438)
chr1 (381-451)||(35163316-35163386)
chr1 (142-252)||(35163418-35163528)
chr1 (382-451)||(30402913-30402982)
chr1 (382-451)||(30409470-30409539)
chr1 (381-448)||(29394071-29394138)
chr1 (283-340)||(29394179-29394236)
chr1 (283-340)||(35163218-35163275)
chr1 (299-340)||(30403024-30403065)
chr1 (299-340)||(30409581-30409622)
chr1 (295-340)||(29393818-29393863)
chr1 (381-451)||(29393710-29393777)
[»] chr8 (12 HSPs)
chr8 (19-273)||(11143689-11143945)
chr8 (19-273)||(1604071-1604327)
chr8 (142-252)||(11144173-11144283)
chr8 (142-252)||(1661482-1661592)
chr8 (381-451)||(11144071-11144141)
chr8 (19-88)||(1661604-1661673)
chr8 (175-273)||(44551873-44551972)
chr8 (283-340)||(11143973-11144030)
chr8 (398-451)||(44552115-44552168)
chr8 (381-451)||(1603876-1603946)
chr8 (283-340)||(1603987-1604044)
chr8 (283-337)||(44552000-44552054)
[»] chr3 (4 HSPs)
chr3 (19-273)||(55040338-55040594)
chr3 (142-252)||(55040000-55040110)
chr3 (381-451)||(55040142-55040212)
chr3 (283-337)||(55040256-55040310)
[»] chr5 (6 HSPs)
chr5 (19-273)||(9260837-9261093)
chr5 (142-252)||(9260497-9260607)
chr5 (398-451)||(9260276-9260329)
chr5 (295-340)||(9260389-9260434)
chr5 (398-451)||(9260635-9260688)
chr5 (283-337)||(9260755-9260809)
[»] chr7 (7 HSPs)
chr7 (19-201)||(13947644-13947826)
chr7 (142-252)||(13948053-13948163)
chr7 (381-451)||(13948312-13948382)
chr7 (295-340)||(13947876-13947921)
chr7 (161-249)||(1972595-1972683)
chr7 (295-340)||(13948226-13948271)
chr7 (416-451)||(13947986-13948021)
[»] chr4 (2 HSPs)
chr4 (18-134)||(46623684-46623800)
chr4 (161-249)||(36892665-36892753)
[»] chr6 (4 HSPs)
chr6 (19-128)||(2311861-2311970)
chr6 (182-273)||(32445856-32445949)
chr6 (175-273)||(14986903-14987002)
chr6 (400-451)||(32446097-32446148)
[»] chr2 (2 HSPs)
chr2 (161-249)||(26450122-26450210)
chr2 (381-451)||(44369362-44369432)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 35162929 - 35163190
Alignment:
Q  14 gacatcatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35162929 gacatcatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgtt 35163028  T
Q  114 atgataaaatagtgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtt 213  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163029 atgataaaatagtgtgcaaataaaaaaactttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtt 35163128  T
Q  214 tctgttttttgtggtctgttctcgaagggcagcaggc--tgcagtgcctctttgttggctgc 273  Q
    ||||||||||||||| |||||| || |||||||||||  || ||||| ||||||||||||||    
T  35163129 tctgttttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 35163190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 30403365 - 30403109
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403365 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 30403266  T
Q  119 aaaatagtgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 218  Q
    ||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403265 aaaatagtgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 30403166  T
Q  219 tttttgtggtctgttctcgaagggcagcaggc--tgcagtgcctctttgttggctgc 273  Q
    |||||||||| |||||| || |||||||||||  || ||||| ||||||||||||||    
T  30403165 tttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 30403109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 30409922 - 30409666
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409922 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 30409823  T
Q  119 aaaatagtgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 218  Q
    ||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409822 aaaatagtgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 30409723  T
Q  219 tttttgtggtctgttctcgaagggcagcaggc--tgcagtgcctctttgttggctgc 273  Q
    |||||||||| |||||| || |||||||||||  || ||||| ||||||||||||||    
T  30409722 tttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 30409666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 29394520 - 29394291
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394520 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 29394421  T
Q  119 aaaatagtgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 218  Q
    ||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394420 aaaatagtgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 29394321  T
Q  219 tttttgtggtctgttctcgaagggcagcag 248  Q
    |||| ||||| |||||| || |||||||||    
T  29394320 ttttcgtggtgtgttcttgaggggcagcag 29394291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 29394036 - 29393903
Alignment:
Q  142 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 241  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||| | || |||||| |     
T  29394036 ctttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtgatgtgctctcgagga 29393937  T
Q  242 gcagcagg--ctgcagtgcctctttgttggctgc 273  Q
     |||||||   || ||||||||| ||||||||||    
T  29393936 acagcaggatgtgtagtgcctctgtgttggctgc 29393903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 30402881 - 30402771
Alignment:
Q  142 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 241  Q
    ||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||||| || |||||||||    
T  30402881 ctttacataaattgaaaaagactgtcctttgagaaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtggtgtgctctcgaagg 30402782  T
Q  242 gcagcaggctg 252  Q
     ||||||||||    
T  30402781 acagcaggctg 30402771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 30409438 - 30409328
Alignment:
Q  142 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 241  Q
    ||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||||||| || |||||||||    
T  30409438 ctttacataaattgaaaaagactgtcctttgagaaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtggtgtgctctcgaagg 30409339  T
Q  242 gcagcaggctg 252  Q
     ||||||||||    
T  30409338 acagcaggctg 30409328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 35163316 - 35163386
Alignment:
Q  381 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35163316 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggaccctcatgttgtttatagctcactg 35163386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 35163418 - 35163528
Alignment:
Q  142 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 241  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||| ||||||| ||||||||||||| || |||||| ||    
T  35163418 ctttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggactttgtcgaagtggtttatgttttttgtggtgtgctctcgaggg 35163517  T
Q  242 gcagcaggctg 252  Q
     || |||||||    
T  35163518 acaacaggctg 35163528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 30402982 - 30402913
Alignment:
Q  382 gtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30402982 gtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctgatgttgtttatagctcactg 30402913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 30409539 - 30409470
Alignment:
Q  382 gtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  30409539 gtaatcaaggggaagacgtatgcgtttgatttgtgttttataggatcctgatgttgtttatagctcactg 30409470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 381 - 448
Target Start/End: Complemental strand, 29394138 - 29394071
Alignment:
Q  381 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctca 448  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  29394138 cgtaatcaaggggaagacgtatgtgtttggtttgtgttttataggatcctgatgttgtttatagctca 29394071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 29394236 - 29394179
Alignment:
Q  283 ggtttctgtttctgtcactaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29394236 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggctgcacct 29394179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 35163218 - 35163275
Alignment:
Q  283 ggtttctgtttctgtcactaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35163218 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggctgcacct 35163275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 30403065 - 30403024
Alignment:
Q  299 actaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  30403065 actaggaaccgttgtgatgttggtgttttaggggctgcacct 30403024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 30409622 - 30409581
Alignment:
Q  299 actaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  30409622 actaggaaccgttgtgatgttggtgttttaggggctgcacct 30409581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 29393863 - 29393818
Alignment:
Q  295 tgtcactaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    ||||||| |||||| ||||||||| |||||||||||||||||||||    
T  29393863 tgtcactcggaaccgttgtgatgtaggtgttttaggggctgcacct 29393818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 29393777 - 29393710
Alignment:
Q  381 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||||| | || || |||||||||||||||   |||||||| | |||| ||||||||||||||||||||    
T  29393777 cgtaatcatgaggcaggcgtatgcgtttggtt---gttttatatggtcctgatgttgtttatagctcactg 29393710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 11143689 - 11143945
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143689 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 11143788  T
Q  119 aaaatagtgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 218  Q
    ||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143789 aaaatagtgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 11143888  T
Q  219 tttttgtggtctgttctcgaagggcagcaggc--tgcagtgcctctttgttggctgc 273  Q
    |||||||||| |||||| || |||||||||||  || ||||| ||||||||||||||    
T  11143889 tttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 11143945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 1604327 - 1604071
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1604327 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaattttcacaacaagtattgtcaatgttatgat 1604228  T
Q  119 aaaatagtgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 218  Q
    ||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  1604227 aaaatagtgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaatagtgatagttttggtggactttgtcgatgtggtttctgt 1604128  T
Q  219 tttttgtggtctgttctcgaagggcagcagg--ctgcagtgcctctttgttggctgc 273  Q
    |||||||||| ||||||||| ||||||||||   || ||||||||||||||||||||    
T  1604127 tttttgtggtgtgttctcgaggggcagcaggatgtgtagtgcctctttgttggctgc 1604071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 11144173 - 11144283
Alignment:
Q  142 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 241  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| || |||||||||    
T  11144173 ctttacataaattgataaagactgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtggtgtgctctcgaagg 11144272  T
Q  242 gcagcaggctg 252  Q
     ||||||||||    
T  11144273 acagcaggctg 11144283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 1661592 - 1661482
Alignment:
Q  142 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 241  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||| ||||||||||||| |||||||| |||| || |||||| ||    
T  1661592 ctttacataaattgataaagattgtcctttgagaaaatagtgatagttttggtggacttcgtcgaggtggtttatgttttttatggtgtgctctcgaggg 1661493  T
Q  242 gcagcaggctg 252  Q
     ||||||||||    
T  1661492 acagcaggctg 1661482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 11144071 - 11144141
Alignment:
Q  381 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11144071 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctgatgttgtttatagctcactg 11144141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 1661673 - 1661604
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaat 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1661673 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaat 1661604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 44551873 - 44551972
Alignment:
Q  175 aaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcaggc--tgcagtgcctctttgttggctg 272  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||| |  |||||| |||||||||||  || ||||||||| |||||||||    
T  44551873 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtggtgttctctcgaggggcagcaggctgtgtagtgcctctgtgttggctg 44551971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 11143973 - 11144030
Alignment:
Q  283 ggtttctgtttctgtcactaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11143973 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggctgcacct 11144030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 44552115 - 44552168
Alignment:
Q  398 cgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  44552115 cgtatgcgtttgatttgtgttttatagggtcctgatgttgtttatagctcactg 44552168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 1603946 - 1603876
Alignment:
Q  381 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||||| | || || ||||||| |||||||||||||||||| | |||| ||||||||||||||||||||    
T  1603946 cgtaatcatgaggcaggcgtatgcatttggtttgtgttttatatggtcctgatgttgtttatagctcactg 1603876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 1604044 - 1603987
Alignment:
Q  283 ggtttctgtttctgtcactaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    ||||| || ||||||||||||||| | || ||||||||||||||||||||||||||||    
T  1604044 ggtttttggttctgtcactaggaatcgttatgatgttggtgttttaggggctgcacct 1603987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 44552000 - 44552054
Alignment:
Q  283 ggtttctgtttctgtcactaggaaccattgtgatgttggtgttttaggggctgca 337  Q
    ||||| || || ||||||| |||||| ||||||||||||||||||||||||||||    
T  44552000 ggtttttggttttgtcactcggaaccgttgtgatgttggtgttttaggggctgca 44552054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 55040594 - 55040338
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  55040594 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagtttcattagatgtaaatttgcataacaagtattgtcaatgttatgat 55040495  T
Q  119 aaaatagtgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 218  Q
    ||||||||||||||||       ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  55040494 aaaatagtgtgcaaataaataaactttacataaattgatgaagattgtcttttgagaaaatagtgatatttttggtatactttgtcgaggtggtttctgt 55040395  T
Q  219 tttttgtggtctgttctcgaagggcagcaggc--tgcagtgcctctttgttggctgc 273  Q
    |||||||||| |||||| || |||||||||||  || ||||| ||||||||||||||    
T  55040394 tttttgtggtgtgttcttgaggggcagcaggctgtgtagtgcatctttgttggctgc 55040338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 55040110 - 55040000
Alignment:
Q  142 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 241  Q
    ||||||||||| ||||||||||| || ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| || |||||| ||    
T  55040110 ctttacataaattgataaagattatcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtggtgtgctctcgaggg 55040011  T
Q  242 gcagcaggctg 252  Q
     ||||||||||    
T  55040010 acagcaggctg 55040000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 55040212 - 55040142
Alignment:
Q  381 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||    
T  55040212 cgtaatcaaggggaagacgtatgtgtttggtttgtgttttataggatcctgacgttgtttatagctcactg 55040142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 55040310 - 55040256
Alignment:
Q  283 ggtttctgtttctgtcactaggaaccattgtgatgttggtgttttaggggctgca 337  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  55040310 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggctgca 55040256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 9261093 - 9260837
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 118  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||    
T  9261093 catgagccacaatcatcacgataatgggagtgaataactaatatgaaatatagttccattagatctaaatttgcacaataggtattgtctatgttatgat 9260994  T
Q  119 aaaatagtgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgt 218  Q
    ||||||||||||||||       ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||  | ||||||||||||||||||||    
T  9260993 aaaatagtgtgcaaataaataaactttacataaattgatagagattgtctgttgagaaaatagtgatagttttggtggattttgtcgaggtggtttctgt 9260894  T
Q  219 tttttgtggtctgttctcgaagggcagcaggc--tgcagtgcctctttgttggctgc 273  Q
    |||||||||| || |||||| |||||||||||  || ||||||||| ||||||||||    
T  9260893 tttttgtggtgtgctctcgaggggcagcaggctgtgtagtgcctctgtgttggctgc 9260837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 9260607 - 9260497
Alignment:
Q  142 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 241  Q
    ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||| || || |||||| ||    
T  9260607 ctttatataaattgataaagattgtcttttgagaaaatagcgatagttttggtggactttgtcgaggtggtttttgttttttgtagtgtgctctcgaggg 9260508  T
Q  242 gcagcaggctg 252  Q
     ||||||||||    
T  9260507 acagcaggctg 9260497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 9260329 - 9260276
Alignment:
Q  398 cgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  9260329 cgtatgcgtttggtttgtgttttatagggtcctgatgttgtttatagcttactg 9260276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 9260434 - 9260389
Alignment:
Q  295 tgtcactaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  9260434 tgtcactcggaaccattgtgatgttggtgttttaggggctgcacct 9260389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 451
Target Start/End: Complemental strand, 9260688 - 9260635
Alignment:
Q  398 cgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  9260688 cgtatgtgtttggtttgtattttataggatcctgatgttgtttatagctcactg 9260635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 9260809 - 9260755
Alignment:
Q  283 ggtttctgtttctgtcactaggaaccattgtgatgttggtgttttaggggctgca 337  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  9260809 ggtttttggttctgtcactaggaaccgttgtgatgttggtgttttaggggttgca 9260755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 13947644 - 13947826
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947644 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 13947743  T
Q  119 aaaatagtgtgcaaatnnnnnnnctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatacttt 201  Q
    ||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13947744 aaaatagtgtgcaaataaataaactttacataaattgataaagattgtcttttgagaaaataatgatagttttggtatacttt 13947826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 13948053 - 13948163
Alignment:
Q  142 ctttacataaagtgataaagattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagg 241  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||| ||    
T  13948053 ctttacataaattgataaagattgtcctttgagaaaatagtgatagttttgggggactttgtcgaggtggtttatgttttttgtggtgtgttctcgaggg 13948152  T
Q  242 gcagcaggctg 252  Q
     ||||||||||    
T  13948153 acagcaggctg 13948163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 451
Target Start/End: Original strand, 13948312 - 13948382
Alignment:
Q  381 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||||| | || || |||||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  13948312 cgtaatcatgaggcaggcgtatgcgtttggtttgtgttttatatggtcctgatgttgtttatagctcactg 13948382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 13947876 - 13947921
Alignment:
Q  295 tgtcactaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  13947876 tgtcactaggaaccgttgtgatgttggtgttttaggggctgcacct 13947921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 1972595 - 1972683
Alignment:
Q  161 gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcagg 249  Q
    |||||||| |||||||||||||| ||||||||||  ||||| |||| |||||||||||  |||| ||| ||  ||||| ||||||||||    
T  1972595 gattgtctgttgagaaaatagtggtagttttggtggactttttcgaagtggtttctgtcctttgcggtgtgccctcgaggggcagcagg 1972683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 13948226 - 13948271
Alignment:
Q  295 tgtcactaggaaccattgtgatgttggtgttttaggggctgcacct 340  Q
    ||||||| |||||| ||||||||| |||||||||||||||||||||    
T  13948226 tgtcactcggaaccgttgtgatgtaggtgttttaggggctgcacct 13948271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 451
Target Start/End: Original strand, 13947986 - 13948021
Alignment:
Q  416 gttttataggatcctcatgttgtttatagctcactg 451  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13947986 gttttataggatcctgatgttgtttatagctcactg 13948021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 46623800 - 46623684
Alignment:
Q  18 tcatgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatga 117  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||    
T  46623800 tcatgagccactatcatcaccataatgggtgtgattaactattatgaaatatagttccattagacctaaatttgcacaacaagtattgtctttgttatga 46623701  T
Q  118 taaaatagtgtgcaaat 134  Q
    |||||||||||| ||||    
T  46623700 taaaatagtgtgtaaat 46623684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 36892665 - 36892753
Alignment:
Q  161 gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcagg 249  Q
    |||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||| ||||| ||| ||  ||||| ||||||||||    
T  36892665 gattgtctgttgagaaaatagtgatagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg 36892753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 2311970 - 2311861
Alignment:
Q  19 catgagccactatcatcacgataatgggtgtgaataactaatatgaaatatagttccattagatgtaaatttgcacaacaagtattgtcaatgttatgat 118  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||    
T  2311970 catgagccacaatcatcacgataatgggagtgaatacctaatatcaaatatagttccattagatctaaatttgcacaataggtattgtctatgttatgat 2311871  T
Q  119 aaaatagtgt 128  Q
    ||||||||||    
T  2311870 aaaatagtgt 2311861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 32445856 - 32445949
Alignment:
Q  182 tgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcaggc--tgcagtgcctctttgttggctgc 273  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| || |||||| |||||||||||  || |||||||||||||| |||||    
T  32445856 tgatagttttggtggactttgtcgaggtggtttctgttttttgtggtgtgctctcgaggggcagcaggctgtgtagtgcctctttgttagctgc 32445949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 14987002 - 14986903
Alignment:
Q  175 aaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcaggc--tgcagtgcctctttgttggctg 272  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||  | |  |||||| |||||| ||||  || ||||||||| |||||||||    
T  14987002 aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtcatgttatctcgaggggcagtaggctgtgtagtgcctctgtgttggctg 14986904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 32446097 - 32446148
Alignment:
Q  400 tatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    ||||||||| |||||||||||||||| | || ||||||||||||||| ||||    
T  32446097 tatgcgtttagtttgtgttttatagggttctgatgttgtttatagcttactg 32446148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 26450122 - 26450210
Alignment:
Q  161 gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtctgttctcgaagggcagcagg 249  Q
    |||||||| |||||||||||||| ||||||||||  |||||||||| ||||||||||| ||||| ||| ||  ||||| ||||||||||    
T  26450122 gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg 26450210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 44369432 - 44369362
Alignment:
Q  381 cgtaatcaaggggaagacgtatgcgtttggtttgtgttttataggatcctcatgttgtttatagctcactg 451  Q
    |||||||| | || || ||||||| |||||||||||||||||| | |||| ||||||||||||||||||||    
T  44369432 cgtaatcatgaggcaggcgtatgcatttggtttgtgttttatatggtcctgatgttgtttatagctcactg 44369362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University