View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9423_low_3 (Length: 357)
Name: NF9423_low_3
Description: NF9423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9423_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 5396530 - 5396861
Alignment:
| Q |
19 |
acaaccattgatgatcatgttcctcttttgcaaaaggtgattttgtttatcttccnnnnnnnttaattgttgtttatggttaattaattagatgttctca |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5396530 |
acaaccattgatgatcatgttcctcttttgcaaaaggtgattttgtttatcttccaaaaaaattaattgttgtttatggttaattaattagatgttctca |
5396629 |
T |
|
| Q |
119 |
ctnnnnnnnc-ggatgttttgctttgattgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtg |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396630 |
ctaaaaaaaatggatgttttgctttgattgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtg |
5396729 |
T |
|
| Q |
218 |
gtgaaccttaacaaggataaagttgtcacacttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatatatctg |
317 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| |
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| T |
5396730 |
gtgaaccttaacaatgataaagttgtgacacttcctggaatatcaattgtttggggacttgctgttatggtattagtctattctataggtcatatctctg |
5396829 |
T |
|
| Q |
318 |
gtgctcatttcaatcccgctgtcacctttgct |
349 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |
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| T |
5396830 |
gtgctcatttcaatcccgctgtcaccattgct |
5396861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 5408247 - 5407917
Alignment:
| Q |
19 |
acaaccattgatgatcatgttcctcttttgcaaaaggtgattttgtttatcttccnnnnnnnttaattgttgtttatggttaattaattagatgttctca |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||| |||| | |
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| T |
5408247 |
acaaccattgatgatcatgttccttttttgcaaaaggtgactttatttatcctttcaaaaaattaattgttgtttatggttaattaattagatcttctga |
5408148 |
T |
|
| Q |
119 |
ctnnnnnnncggatgttttgctttgattgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtgg |
218 |
Q |
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|| |||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||| |
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| T |
5408147 |
ctaaaaacatggatgtgttgcgttgattgttgagtatagttggtagcagaagtggtgcgaacattcttcttgatatttgctggatgtggttctgtggtgg |
5408048 |
T |
|
| Q |
219 |
tgaaccttaacaaggataaagttgtcacacttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatatatctgg |
318 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||| |
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| T |
5408047 |
tgaaccttaacaatgataaagttgtgacacttcctggaattgcaattgtttggggacttgttgttatggtattagtctattctataggtcatatctctgg |
5407948 |
T |
|
| Q |
319 |
tgctcatttcaatcccgctgtcacctttgct |
349 |
Q |
| |
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||| |||||||||||||| |||||| ||||| |
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| T |
5407947 |
tgcccatttcaatcccgcggtcaccattgct |
5407917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 146 - 349
Target Start/End: Original strand, 5388549 - 5388752
Alignment:
| Q |
146 |
tgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtca |
245 |
Q |
| |
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|||||||| |||||||||||||| ||||| || || | ||||||||||||||| || ||||||||||| |||||||| ||| |||| || ||||| || | |
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| T |
5388549 |
tgttgaatgtagttggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaa |
5388648 |
T |
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| Q |
246 |
cacttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcacctt |
345 |
Q |
| |
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||| |||||| || |||||||||||||| || |||||||||| ||||| || ||| ||||||| || ||||||||||||||||| || ||||||||| | |
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| T |
5388649 |
cacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgctgtcaccat |
5388748 |
T |
|
| Q |
346 |
tgct |
349 |
Q |
| |
|
|||| |
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|
| T |
5388749 |
tgct |
5388752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 146 - 349
Target Start/End: Original strand, 5402358 - 5402561
Alignment:
| Q |
146 |
tgttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtca |
245 |
Q |
| |
|
||||| || |||||||||||||| ||||| || || | ||||||||||||||| || ||||||||||| |||||||| ||| |||| || ||||| || | |
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| T |
5402358 |
tgttggatgtagttggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaa |
5402457 |
T |
|
| Q |
246 |
cacttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcacctt |
345 |
Q |
| |
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||| |||||| || |||||||||||||| || |||||||||| ||||| || ||| ||||||| || ||||||||||||||||| || ||||||||| | |
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| T |
5402458 |
cacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgctgtcaccat |
5402557 |
T |
|
| Q |
346 |
tgct |
349 |
Q |
| |
|
|||| |
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|
| T |
5402558 |
tgct |
5402561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 148 - 350
Target Start/End: Original strand, 5415095 - 5415297
Alignment:
| Q |
148 |
ttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtcaca |
247 |
Q |
| |
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||||| |||| |||||||||||||||||||||||| | | |||||||||| || ||||||||||| | ||||| |||||||| ||| | || || ||| |
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| T |
5415095 |
ttgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgcgggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaaca |
5415194 |
T |
|
| Q |
248 |
cttcctggaatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcacctttg |
347 |
Q |
| |
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||||||||||| || ||| ||||||| | |||||||||| ||| | || ||| ||||||| || ||||||||||||||||| || ||||| ||| ||| |
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| T |
5415195 |
cttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctgttaccattg |
5415294 |
T |
|
| Q |
348 |
ctt |
350 |
Q |
| |
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||| |
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|
| T |
5415295 |
ctt |
5415297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 156 - 350
Target Start/End: Original strand, 36267554 - 36267748
Alignment:
| Q |
156 |
agttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaaggataaagttgtcacacttcctgg |
255 |
Q |
| |
|
|||||||||| || ||| | || |||| |||||||||||||| || |||||| | ||| |||||||| ||||| || || ||||| ||||||||||| |
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| T |
36267554 |
agttggtagctgaggtgataggcacatatttcttgatatttgccggttgtgcttcggtgttggtgaacaagaacaatgaaaatgttgtaacacttcctgg |
36267653 |
T |
|
| Q |
256 |
aatatcaattgtttggggacttgctgttatggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgtcacctttgctt |
350 |
Q |
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||| ||||||||||||||||||||||| ||||| |||| || ||| ||||||| || |||||||||||||||||||| || || ||| |||||| |
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| T |
36267654 |
aatttcaattgtttggggacttgctgtgatggtgctggtttactctcttggtcacatctctggtgctcatttcaatcctgcagttaccattgctt |
36267748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 36262498 - 36262576
Alignment:
| Q |
261 |
caattgtttggggacttgctgttatggtattggtctattctattggtcatatatctggtgctcatttcaatcccgctgt |
339 |
Q |
| |
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|||||||||||||||| || | |||||||| | || ||| |||||||||| |||||||||||||||||||| ||||| |
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| T |
36262498 |
caattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcatttcaatcctgctgt |
36262576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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