View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9423_low_5 (Length: 311)
Name: NF9423_low_5
Description: NF9423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9423_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 19615243 - 19615534
Alignment:
| Q |
10 |
atcatcatttgacacaatttaaaatgttcgaggagtgtaccagctactaacggcagcagaacctcccaatcgtgatgaatatcagaatataatttggaat |
109 |
Q |
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| T |
19615243 |
atcatcatttgacacaatttaaaatgttcgaggagtgtaccagctactaacgggagcagaacctcccaatcgtgatgaatatcacgatataatttggaat |
19615342 |
T |
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| Q |
110 |
aaaacaatacctttaaaagtaacaatttttgcgtggtttctatttcgaaatcgtattgcaatgaaagataatatggtgcagcatgggatcatccaatcga |
209 |
Q |
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| T |
19615343 |
aaaacaatacctttaaaagtaacaatttttgcgtggtttctatttcggaatcgtattgcaatgaaagataatatgatgcagcatgggatcatccaatcga |
19615442 |
T |
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| Q |
210 |
atcaaaatgtgtgtagttacgggtgtggtcaagctaaaccaatcgatcattcgttctttgaatatagtcattttggcagcatttggtctctg |
301 |
Q |
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| T |
19615443 |
atcaaaatgtgtgtagttacgggtgtggtcaagctaaaccaatcaatcattcgttctttgaatatagtcattttggcagcatttggtctctg |
19615534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 19621003 - 19621278
Alignment:
| Q |
27 |
tttaaaatgttcgaggagtgtaccagctactaacggcagcagaacctcccaa-tcgtgatgaatatcagaatataatttggaataaaacaatacctttaa |
125 |
Q |
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| T |
19621003 |
tttataatgttttaggagtgtaccagctactaacggcagcagaacctcccaaatcgtgatgaatatcgtcatataatttggaataaaacaatacctttaa |
19621102 |
T |
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| Q |
126 |
aagtaacaatttttgcgtggtttctatttcgaaatcgtattgcaatgaaagataatatggtgcagcatgggatcatccaatcgaatcaaaatgtgtgtag |
225 |
Q |
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| T |
19621103 |
aagtaacaatttttgtgtggtggctatttcggaatcgtattgcaacaaaagacaatttggtgcagcatgggaacatccaatcgaatcaaaatgtgtgtag |
19621202 |
T |
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| Q |
226 |
ttacgggtgtggtcaagctaaaccaatcgatcattcgttctttgaatatagtcattttggcagcatttggtctctg |
301 |
Q |
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| T |
19621203 |
ttacaggtgttgtcaagctgaaccaatcgatcatttgttctttgaatgtaatcattttggcagcatttggcctctg |
19621278 |
T |
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